PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 41647.6 Da PI: 6.7936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.3e-12 | 195 | 241 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++YIk+Lq HL.SW.v1.0.G033561.1 195 DHVMAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYIKNLQ 241 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.326 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-17 | 195 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 195 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-17 | 196 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.68E-13 | 196 | 245 | No hit | No description |
SMART | SM00353 | 6.7E-15 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MEISSAKWMS ELELEDPANI FEQYQVDYSF DDLNFQSFSS ESYSSYPNFV PENPQNLSSN 60 NTILDQAPQT ESFERPSKQL KTNSWNSCAT TTPNDQISTK ASSSSSSQFI SFEKYANSAS 120 ATPENKKYYN DLDVTTTTIT TTLNVKPKDE PGFNGYNMVF QSPYETRNCS PNKYGQGVKR 180 PLGVSTTRSP LHAQDHVMAE RKRREKLSQR FIALSAVVPG LKKMDKASVL GDAIKYIKNL 240 QERLSTLEER SAKKTVESVV FIKRSHLSAD DETSSSDENF DSNSNQPLPE IEAKVSDKDV 300 LIRIHCEKHK GCLANILSQV EKLNLTIFNS SVLPFGGSTI HITIVAKMDV EYNMKVKDLV 360 RNIRQALLRN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_B | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_E | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_F | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_G | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_I | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_M | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
5gnj_N | 8e-13 | 195 | 248 | 8 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 204 | ERKRRE |
2 | 200 | 205 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105102.1 | 1e-147 | transcription factor bHLH18 | ||||
Swissprot | Q1PF16 | 5e-62 | BH019_ARATH; Transcription factor bHLH19 | ||||
TrEMBL | A0A2P5FHA1 | 0.0 | A0A2P5FHA1_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010105102.1 | 1e-147 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 1e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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