PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G033523.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 344aa MW: 38455.9 Da PI: 6.1792 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.7 | 2e-43 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk++rrkC+++Cv+apyfp +qp+kf nvhk+FGasnv+kll++l+ e+reda++sl+yeA+ar+rdPvyG+vg+i+ lqq+l+q HL.SW.v1.0.G033523.1 6 PCAACKIQRRKCTQECVFAPYFPPDQPQKFMNVHKVFGASNVSKLLQELSAENREDAVNSLAYEADARLRDPVYGCVGLISVLQQRLKQ 94 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 ++ +l ++k+e HL.SW.v1.0.G033523.1 95 VQYDLLSAKKE 105 ***99988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.568 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-42 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MQSNSPCAAC KIQRRKCTQE CVFAPYFPPD QPQKFMNVHK VFGASNVSKL LQELSAENRE 60 DAVNSLAYEA DARLRDPVYG CVGLISVLQQ RLKQVQYDLL SAKKELAAYL GPQSMVSIFQ 120 APIYMPHQGN PSSSSLYNNP YSSIMGAPGG GPLIIREPSQ VQPQAHVDAQ QIQAQIQAQI 180 QAQTQPHYLD AHQLAREHQQ DVLMRLTVEQ KMAIMQQQQQ QQPIQYQHRS VQQNLARFTT 240 GHDPRTGPDD ETAEFNEMGG SATAVGSGLV LGSGYQHPYD LVQQQDQQQS EHGHNPLQQL 300 HREEDQLLFD NPESPVLQLG PQTQLWHKFG NEDDRRNNIG PTS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-45 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-45 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018856691.1 | 1e-78 | PREDICTED: LOB domain-containing protein 36-like | ||||
TrEMBL | A0A2P5ADH0 | 3e-97 | A0A2P5ADH0_PARAD; Lateral organ boundaries domain containing protein | ||||
TrEMBL | A0A2P5FY72 | 3e-97 | A0A2P5FY72_TREOI; Lateral organ boundaries domain containing protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-63 | ASYMMETRIC LEAVES 2-like 1 |