PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 332aa MW: 37471.1 Da PI: 4.3357 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.3e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k HL.SW.v1.0.G033496.1 86 KKRRLSANQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAVWFQNRRARYK 139 55689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.9e-40 | 86 | 177 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kkrrls++qv++LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEk+y++L+++yd+lk + + L ke e+L++e HL.SW.v1.0.G033496.1 86 KKRRLSANQVQFLEKNFELENKLEPERKVQLAKELGLQPRQVAVWFQNRRARYKTKQLEKEYDSLQTSYDRLKYDYDILLKESETLKNE 174 9**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ HL.SW.v1.0.G033496.1 175 VNS 177 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-19 | 70 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-17 | 83 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.49E-17 | 84 | 142 | No hit | No description |
Pfam | PF00046 | 3.7E-16 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 88 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-6 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-13 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MASGKVYGGS NMSILLQDDR LPCNSDVLKS LWIPSSSSSF QGSKSRLSFE SVGGGDSTDG 60 SFFQPHDKDD DNVDDDYDGC FHQPGKKRRL SANQVQFLEK NFELENKLEP ERKVQLAKEL 120 GLQPRQVAVW FQNRRARYKT KQLEKEYDSL QTSYDRLKYD YDILLKESET LKNEVNSLNE 180 KLLSEEKDTK KNSENTEPEN PIVKTVVSET VSNVATMVVC KHEDASSAKS DVFDSDSPNY 240 AENYCSILEP ADSSHMFEPT DQSDYSQDED DNNNKNSSNC NLMSQSFLPP PLPLSLPCIP 300 KFEACCYDDP PASSCNFGFQ VEDQAFNFWS Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARYKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015894877.1 | 1e-142 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2P5FQF3 | 1e-165 | A0A2P5FQF3_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_007157405.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-33 | homeobox 1 |