PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033437.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 694aa    MW: 76741.2 Da    PI: 5.1631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033437.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.21.3e-1303066781374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv+lL++c+ea+ s++ +++++++a+l +lasp+g+p+ R++ay+teALa r++r +++++++ pp+e + +  +++ +al+++++v+P
  HL.SW.v1.0.G033437.1 306 LVSLLTSCVEAIGSKSIHAINHFIAKLGDLASPKGTPISRVTAYYTEALALRVTRLWPQMFHITPPREFE-RVDEDSGSALRFLNQVTP 393
                           6899*****************************************************************8.5567778999******** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           i+kf h+t N+++++a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l +pfef
  HL.SW.v1.0.G033437.1 394 IPKFLHFTSNEMLMRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALSLPFEF 478
                           ************************************************************....************************* PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++ v++rled++l++L+vk++E++aVn+++qlh++l +s       +++L l++s++P+vvv++eqea+hn++++ +r++++l++ysa+
  HL.SW.v1.0.G033437.1 479 HP-VVDRLEDVRLWMLHVKEQESVAVNCIFQLHKTLYDSSGGVL--RDFLGLIRSTNPTVVVMAEQEAEHNDPRLEARVCNSLKFYSAI 564
                           **.7******************************9976655544..79***************************************** PP

                  GRAS 268 fdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                           fds+ ++ lp +s +rikvE++ ++rei+n+va eg +r erhe++e+Wr+ +e+ GF++v++se++ +q ++llr+++ ++ y+v+e+
  HL.SW.v1.0.G033437.1 565 FDSIdASLLPVDSPARIKVEEM-FAREIRNIVAGEGMDRLERHESFETWRKLMEQGGFRSVRISERELMQSRMLLRMYScDEDYSVKEQ 652
                           ****556689999*********.********************************************************9999****98 PP

                  GRAS 355 ......sgslvlgWkdrpLvsvSaWr 374
                                  g ++l W+d+pL++vSaW+
  HL.SW.v1.0.G033437.1 653 gqddgaGGGVTLNWQDQPLFTVSAWT 678
                           88888677888**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.295280651IPR005202Transcription factor GRAS
PfamPF035144.6E-128306678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE APAQFQACHF PMSTQRLDLP CSFSRKDTSR PQPIRPVTGL  60
SVEKPIESKT SSCSLKQSIR LPPLATTAPA ASAAAQTTFG EGRKDIKDEF WPRGKSLKRF  120
AEQGSVDESF INRAKRKRGI SDDSGETNDV VREDEERLSL GQLGAGNFWL QPGFNPHLPF  180
SLTCSGGEEE ERVCYVPGGE VISPPLPLSN NPWVDSVVTE ITDLGEKGGE TSRHVMPRKE  240
GSAAASSASS GSQSQSQSLV PRINEVVPDY DVGNGSRNPY SRGGSEVVEV GEEDLINQEE  300
SEGFELVSLL TSCVEAIGSK SIHAINHFIA KLGDLASPKG TPISRVTAYY TEALALRVTR  360
LWPQMFHITP PREFERVDED SGSALRFLNQ VTPIPKFLHF TSNEMLMRAF EGKDRVHIID  420
FDIKQGLQWP SLFQSLASRT NPPSHVRITG IGESKQELNE TGDRLAGFAE ALSLPFEFHP  480
VVDRLEDVRL WMLHVKEQES VAVNCIFQLH KTLYDSSGGV LRDFLGLIRS TNPTVVVMAE  540
QEAEHNDPRL EARVCNSLKF YSAIFDSIDA SLLPVDSPAR IKVEEMFARE IRNIVAGEGM  600
DRLERHESFE TWRKLMEQGG FRSVRISERE LMQSRMLLRM YSCDEDYSVK EQGQDDGAGG  660
GVTLNWQDQP LFTVSAWTPA DVAGSSSSFS QPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-722926795380Protein SCARECROW
5b3h_A4e-722926794379Protein SCARECROW
5b3h_D4e-722926794379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896272.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2P5BBU00.0A0A2P5BBU0_TREOI; GRAS transcription factor
STRINGEOY246320.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein