PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C2H2 | ||||||||
Protein Properties | Length: 348aa MW: 38487.1 Da PI: 7.7095 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 146 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H HL.SW.v1.0.G033230.1 146 YECKTCNRSFPSFQALGGHRASH 168 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 242 | 264 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H HL.SW.v1.0.G033230.1 242 HECSICGSEFTSGQALGGHMRRH 264 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.81E-5 | 145 | 174 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 145 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.06 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.83E-6 | 239 | 267 | No hit | No description |
Pfam | PF13912 | 3.4E-11 | 241 | 266 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 242 | 264 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 242 | 269 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 244 | 264 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEEVEVVVSH EQDHNNHNHH QQQMNILMKG KRTKRQRQPS SPLTATATAT ATAAASTSSS 60 SANYSFSSPT TSSAGGGGGG GGGGESTTTD QEEEQDMANC LILLAQGDHL RRRHRRRHRR 120 KETPLLTATT TTTVTPSNDT KGFYVYECKT CNRSFPSFQA LGGHRASHKK PKLFSDDKKS 180 LHPISTAAAA EEFYEEDQEV VEDDPNPHPH PHPLPHHHHH QEVLVFNKTT TSFNNKQANK 240 VHECSICGSE FTSGQALGGH MRRHRAHNSS STTTIATTNN SSSFHSLPQH PNKVQRNILS 300 LDLNLPAPEE DHNHNHHHHH HRESKFQFAP TQQALVFSAP ALVDCHY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRHRRRHRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-46 | C2H2 family protein |