PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033147.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 255aa    MW: 28257.9 Da    PI: 7.9243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033147.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1381127354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  HL.SW.v1.0.G033147.1  81 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 127
                           58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85378127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-1281130No hitNo description
PfamPF000107.5E-1181127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1482136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-1582141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4169233No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MQPENPDLYQ FLADNGLINV VGPYNFPASG GGSGEHHNYQ FSSMQSFCSS SSYYPYSKGS  60
TGTCSDSNTT APHDRALAAL KNHKEAEKRR RERINSHLDK LRSLLPCNSK TDKASLLAKV  120
VQRVKELKEQ TSELTELESF PSETDEITVI SSGDYSPIGG EGQLIFKASL CCEDRSDLIP  180
DLIEILKSLH LKTLKVEMAT LGGRIRNVLM VAADKEHSIE SVHFLQNALK SLLERSNSSE  240
RSKRRRGLDR KIVI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448046e-44EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112839.11e-145transcription factor bHLH106
SwissprotO806742e-82BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2P5B9A81e-158A0A2P5B9A8_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010112839.11e-145(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]