PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 21548.2 Da PI: 9.099 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 30 | 83 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+R ++t+ q++ Le+ F ++++++ e++ +LA+klgL+ rqV +W+qNrRa++k HL.SW.v1.0.G033143.1 30 RTR-RLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHK 83 444.89***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 102.5 | 3.5e-33 | 30 | 121 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 + rrl++ qv+lLE+sF++++kL++erK +la +Lgl+prqva+W+qnrRAR+kt+ +E dy++++ ++d + +e++rLe+ev L++e HL.SW.v1.0.G033143.1 30 RTRRLTQAQVRLLETSFTSDHKLQSERKLHLAAKLGLSPRQVAIWYQNRRARHKTQTVEFDYRSIQLKLDDVLAEKKRLEREVGMLKHE 118 789************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ HL.SW.v1.0.G033143.1 119 LNR 121 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.36E-18 | 19 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.682 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 28 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.65E-14 | 29 | 85 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 30 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-18 | 34 | 83 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDFQCLDILT DETKQNQDFS KPLTQAQQRR TRRLTQAQVR LLETSFTSDH KLQSERKLHL 60 AAKLGLSPRQ VAIWYQNRRA RHKTQTVEFD YRSIQLKLDD VLAEKKRLER EVGMLKHELN 120 RAREMLLRAS GNDGGGRSSP DASLPSVIST SGVDDHGSSS SLQNYYTFGT ENVAELPVGE 180 LYTCLSPWP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093963.1 | 1e-76 | homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2P5FJ64 | 3e-94 | A0A2P5FJ64_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010093963.1 | 5e-76 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-22 | homeobox protein 40 |