PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 270aa MW: 27974.1 Da PI: 10.1465 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.3 | 1.1e-37 | 42 | 121 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ s s+ +s HL.SW.v1.0.G033116.1 42 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV--SVSVRGS 121 79******************************************************************87732..2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-32 | 47 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 47 | 101 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSNSDVGATN GVNDGALIDP NQRQQQQQQP QQLTTTNGAL VVKKPPSKDR HSKVDGRGRR 60 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRG 120 SAGNGLGGVS ASLSTSSGNS GSLEHKPLLG PTPFILGKRV RPDDGVGKDN HDGHDGVSVV 180 GAMGSMVGSA TTAPGGFWAP HFGQVWSFAA APPDMQPSVS QQPSLFVQQQ TIGEASAARV 240 GNYLPGHLNL LASLSGGQGN SGRREDDPR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096790.1 | 1e-127 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-90 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2P5F0A8 | 1e-141 | A0A2P5F0A8_TREOI; TCP transcription factor | ||||
STRING | XP_010096790.1 | 1e-127 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-75 | TCP family protein |