PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033087.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 417aa    MW: 45448.8 Da    PI: 6.7137
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033087.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-061344435
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                            C+ ++e+ + l+C+ ++  lC  C ++ H+
  HL.SW.v1.0.G033087.1 13 VPCDFCSEQVAVLYCRADSAKLCLFCDQHVHS 44
                          67***************************995 PP
2zf-B_box20.31.1e-065599341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                           ++C+++++++++  C + +  lC+dC    H g       H++ p
  HL.SW.v1.0.G033087.1 55 SQICDNCGSEPVSVRCSTENLVLCHDCDWDAH-GtcsvspaHERNP 99
                          579*************************9999.5588888888776 PP
3CCT63.85.2e-22368411144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R +a++RYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk+a
  HL.SW.v1.0.G033087.1 368 RGNAMQRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKAA 411
                           7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-121057IPR000315B-box-type zinc finger
PROSITE profilePS501199.4991057IPR000315B-box-type zinc finger
CDDcd000213.91E-71345No hitNo description
PROSITE profilePS501199.47153100IPR000315B-box-type zinc finger
CDDcd000211.46E-657100No hitNo description
SMARTSM00336258100IPR000315B-box-type zinc finger
PROSITE profilePS5101714.902368410IPR010402CCT domain
PfamPF062032.2E-16368410IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MVNSPRSRTG NSVPCDFCSE QVAVLYCRAD SAKLCLFCDQ HVHSANLLSR KHLRSQICDN  60
CGSEPVSVRC STENLVLCHD CDWDAHGTCS VSPAHERNPI DGFSGCPSAL ELASVWGFHL  120
GDKKSARPDS VIQDFELGMA MPEDLSWSGV SFQDLIVPTG NGVVGEEGKK PSGVGASCCG  180
KKKHVMYKQL VELLKRDLVA RESDELGGDG ERDGGGRGGD VESVMPGSPN RSGWQRKVEA  240
ALSLGDEGDA IWDFHSGRLR VNEEPEVSYG ANDAGFMIKN FCDLMNCSVA PDDMTINNGS  300
QGPATSESNN LPIGRGASSS SAYGKHKNEE CSASREVFFM EQPFLVRNDS VKTAATTKEE  360
LEVLAQNRGN AMQRYKEKKK NRRYDKHIRY ESRKARADTR KRVKGRFVKA AEAPDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902288.11e-167zinc finger protein CONSTANS-LIKE 15
SwissprotQ9C7E81e-102COL15_ARATH; Zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A2P5F2210.0A0A2P5F221_TREOI; Zinc finger-domain containing protein
STRINGXP_008222351.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-104B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]