PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G033022.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 245aa    MW: 27840.7 Da    PI: 10.0326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G033022.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0586108223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+++++++ +L  Hi+  H
  HL.SW.v1.0.G033022.1  86 SCSVCSRVYPTSRLLSIHISEaH 108
                           6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.445883IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806083IPR007087Zinc finger, C2H2
SMARTSM00355585108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087108IPR007087Zinc finger, C2H2
SMARTSM003551.1123148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAMEVEQSPL GFPYWKPLLR RFDPDSPFFA SGNIERELLA KQVFLSQFQY FRTLKIRVSC  60
PIAGCGAHLT SLEDFEDHYN ARHTASCSVC SRVYPTSRLL SIHISEAHDS FFQAKVARGY  120
AMYECLVEGC TLKFKNYKSR HQHLVDKHKF PTSFEFFKKA HASKKLRQKQ QRKQAIHKKA  180
DTSNMEVESE MIDGLVSAVS KLSTSDSSPS SISFGRRNTR GLTFVPRAVQ RDKRPDSSSA  240
ETKT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015893832.11e-131zinc finger protein 511
TrEMBLA0A2P5CJX11e-142A0A2P5CJX1_PARAD; TFIIH C1-like domain containing protein
STRINGXP_006470078.11e-128(Citrus sinensis)
STRINGXP_006447049.11e-128(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-101zinc ion binding;nucleic acid binding;zinc ion binding