PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G032939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 41094.4 Da PI: 7.2584 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.8e-32 | 172 | 225 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ HL.SW.v1.0.G032939.1 172 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 225 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 169 | 226 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-28 | 170 | 226 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-23 | 172 | 225 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-7 | 173 | 224 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MLPNQSTKMR SSSSSLPDLS LQISPPSIPV PDCLTEANNN EVVLLLSDRS STTTDSGSST 60 TGSDLSHENG LYNNNPLQKT TNCYSSLGGG SNHHEPTLSL GFETKDNHLP PPVLLHHQHH 120 HHLPRSFNSN SNNININNHH HFHSHHQPQI YGREFKRNPR SISGVKRSVR APRMRWTTTL 180 HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKSTD KAAGQEQTDL 240 GLNQRTGINI VNDDHVDGVL SSDILAQPHS GLPSSHVGPW SSLPVESPNE RSHSSHENGS 300 TVPYDFRENG AKVEKKRSDI GISDSLEERV ECSSLSSSNM CLNLEFTLGR PSWQKDYAHH 360 DSSNELTLLK C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-17 | 173 | 227 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097641.1 | 1e-125 | probable transcription factor KAN4 isoform X2 | ||||
TrEMBL | A0A2P5FN27 | 1e-158 | A0A2P5FN27_TREOI; KANADI transcription factor | ||||
STRING | XP_010097641.1 | 1e-125 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4463 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.1 | 1e-56 | G2-like family protein |