PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032668.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family DBB
Protein Properties Length: 297aa    MW: 31912.6 Da    PI: 4.7327
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032668.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06447542
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  HL.SW.v1.0.G032668.1  4 QCNVCEAAEASVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                          7******99*********************66899999999986 PP
2zf-B_box27.85.4e-095394237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                          +++kC+ +++    +fC +++ llC++C +++H        H
  HL.SW.v1.0.G032668.1 53 DMPKCDICQDTIGYFFCLEDRALLCRKCDVAIHTAnsfvsgH 94
                          789*******999********************545555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.68147IPR000315B-box-type zinc finger
CDDcd000211.77E-9347No hitNo description
SMARTSM003362.2E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578452.98E-54591No hitNo description
PROSITE profilePS501199.1435299IPR000315B-box-type zinc finger
SMARTSM003364.4E-165299IPR000315B-box-type zinc finger
PfamPF006435.1E-75395IPR000315B-box-type zinc finger
CDDcd000212.02E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEA AEASVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS SSDMPKCDIC  60
QDTIGYFFCL EDRALLCRKC DVAIHTANSF VSGHQRFLLT GVKVALEATE PVESSLGKSV  120
SGGKGPEKKN YPVSKSETQI PPVGEYKAST VHVGSGVQDF TAPKMSFTGG STAESIPQWN  180
IDEYIGLTDF NENYEFLGNG GTSKADSGKL GESESPILRA GEEELGDDEC LGQVPDASWT  240
VPQMPSPPTF SGLCWPRSSY SSSDYAVSVP DVSYSRLQNP SYSQSNGTIS KRQRQF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019464.11e-154B-box zinc finger protein 22
SwissprotQ9SYM23e-95BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2P5D9531e-180A0A2P5D953_PARAD; B-box-type zinc finger
STRINGVIT_19s0014g00350.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-87light-regulated zinc finger protein 1