PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G032629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TALE | ||||||||
Protein Properties | Length: 240aa MW: 27523.1 Da PI: 7.0718 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.7 | 1.7e-07 | 188 | 221 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + HL.SW.v1.0.G032629.1 188 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 221 468*****************************87 PP | |||||||
2 | ELK | 25.9 | 2.3e-09 | 142 | 163 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ HL.SW.v1.0.G032629.1 142 ELKIELKQGFKSRIEDVREEIL 163 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 7.7E-21 | 26 | 81 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-16 | 30 | 80 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 142 | 162 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 162 | 225 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-10 | 164 | 229 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.65E-16 | 164 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.56E-11 | 165 | 226 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-25 | 169 | 227 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.2E-18 | 182 | 221 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
QLPLIDAQLS QSHHLLRSYA SLAHSSNLSH HDRQDLDNFL AQYLIVLCTF KEQLQQHVRI 60 HAVEAVMACR EIENTLQALT GVSLGEGTGA TMSDDEDELV GQMDYCLDQS GGDNGNDMMM 120 MGFGPLLPTE SERSLMERVR HELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK 180 NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 9e-13 | 165 | 221 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 238 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible developmental regulator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding; up to 7-fold increase. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108056.1 | 1e-155 | homeobox protein HD1 | ||||
Swissprot | P46606 | 1e-142 | HD1_BRANA; Homeobox protein HD1 | ||||
TrEMBL | A0A2P5CSP5 | 1e-162 | A0A2P5CSP5_TREOI; Knotted-like homeobox transcription factor | ||||
STRING | XP_010108056.1 | 1e-155 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-133 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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