PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032626.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SRS
Protein Properties Length: 356aa    MW: 38501.3 Da    PI: 7.7559
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032626.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.54.9e-701242852154
                DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalss 88 
                           +sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++ ++++++    ++skr+re++  +++ +++
  HL.SW.v1.0.G032626.1 124 GSGGMNCQDCGNQAKKDCIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTALQLQQQEQQfrVLDNSKRHRENQGGSAALIAC 212
                           5799*****************************************************99988888777789999999996666666677 PP

                DUF702  89 tklssaeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           t+++++++++  +tss       +P+ev+s+avfrcv+vs++dd +e++aYqtav+igGhvfkGiLyd+G+e+
  HL.SW.v1.0.G032626.1 213 TNTTTTTTTRLPSTSSglelggaFPAEVNSSAVFRCVKVSGMDDVDENYAYQTAVNIGGHVFKGILYDHGPEA 285
                           77666666666666667777777***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.8E-66127284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.9E-27129171IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-25235283IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAGFFCLGGP RDHHHPHQQS STPSKQEDQQ DQVERERNLF LYRSATDSEI CTNNSNKGGS  60
FEIWPHHHQH QQPQNFNNYV LSFGSSPSRA NNNSSGSRNL NDVVSADDPT RLGFTVMRPG  120
GVGGSGGMNC QDCGNQAKKD CIHLRCRTCC KSRGFQCQTH VKSTWVPAAK RRERQQQLTA  180
LQLQQQEQQF RVLDNSKRHR ENQGGSAALI ACTNTTTTTT TRLPSTSSGL ELGGAFPAEV  240
NSSAVFRCVK VSGMDDVDEN YAYQTAVNIG GHVFKGILYD HGPEAHYTGG DGSSGRGGNG  300
EDSTTQHLHL ITAGTAGATN TAGSNPSISL LDPSMYPTPL NAFMAGTQFF PPPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105273.11e-129protein SHI RELATED SEQUENCE 5
TrEMBLA0A2P5EZM81e-139A0A2P5EZM8_TREOI; Protein SHI RELATED SEQUENCE
STRINGXP_010105273.11e-129(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.11e-64Lateral root primordium (LRP) protein-related