PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G032472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 90aa MW: 10493.8 Da PI: 7.5402 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 3 | 52 | 7 | 56 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++eq + L + Fe+++++ e++ +LA++lg++ rqV vWFqNrRa+ k HL.SW.v1.0.G032472.1 3 LSEEQANFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQNRRARLK 52 789*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 106.5 | 2e-34 | 2 | 85 | 5 | 88 |
HD-ZIP_I/II 5 rlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 rls+eq+++L ++Fe+e+kL perK +la+eLg++prqvavWFqnrRAR k+ +lE++y++Lk+ ++l+++++rLe+ev++L HL.SW.v1.0.G032472.1 2 RLSEEQANFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQNRRARLKAEKLEEEYSSLKKVNESLVNDQRRLESEVHSLS 85 9********************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.018 | 1 | 54 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-19 | 2 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-16 | 2 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.85E-11 | 2 | 52 | No hit | No description |
SMART | SM00389 | 7.8E-10 | 2 | 58 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-15 | 3 | 52 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.5E-6 | 25 | 34 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 29 | 52 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 34 | 50 | IPR000047 | Helix-turn-helix motif |
Gene3D | G3DSA:1.20.5.170 | 9.5E-4 | 56 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MRLSEEQANF LARNFESEQK LAPERKDRLA SELGIDPRQV AVWFQNRRAR LKAEKLEEEY 60 SSLKKVNESL VNDQRRLESE VHSLSSLYT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028775618.1 | 2e-30 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 3e-27 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0V0I7D1 | 7e-29 | A0A0V0I7D1_SOLCH; Putative ovule protein | ||||
TrEMBL | A0A1S2YYP5 | 1e-28 | A0A1S2YYP5_CICAR; homeobox-leucine zipper protein ATHB-40 | ||||
STRING | XP_004512013.1 | 2e-29 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-21 | homeobox protein 40 |
Publications ? help Back to Top | |||
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