PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G032469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 210aa MW: 23075.8 Da PI: 9.9849 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.5 | 9.6e-22 | 145 | 196 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK+ kgs++p + +gCp++k+ver+ +d +++++tYegeHnh+ HL.SW.v1.0.G032469.1 145 DNYSWRKYGQKPTKGSPHPS-----SVRGCPARKHVERALDDSSMLVVTYEGEHNHS 196 9******************7.....589****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.3E-16 | 95 | 140 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.2E-23 | 131 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.366 | 138 | 198 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-19 | 141 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-26 | 143 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-17 | 145 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
TYDQNVVVIP ITVVIERKDK DHSSSSTNTT INFSSYSTAA TTASFLSSLT GDSDTKLHHH 60 HNHHQPLSSS PGFQITNLSQ VSSVGKPPIS TSSLKRRCSF ENLGSDKCDS DSSGRCRCSK 120 KRKLRLKRVV RVPAISLKMA NIPPDNYSWR KYGQKPTKGS PHPSSVRGCP ARKHVERALD 180 DSSMLVVTYE GEHNHSLSVA ETSNLILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-16 | 131 | 197 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229738 | 1e-32 | KP229738.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY09) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205552.1 | 1e-93 | probable WRKY transcription factor 7 | ||||
Swissprot | O22176 | 1e-58 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A2P5D1L7 | 2e-95 | A0A2P5D1L7_TREOI; WRKY domain containing protein | ||||
STRING | EMJ06751 | 4e-93 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 3e-44 | WRKY DNA-binding protein 7 |
Publications ? help Back to Top | |||
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