PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032151.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 529aa    MW: 59175.8 Da    PI: 5.4353
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032151.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34171072101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y++++d++++e++sws++++sfvv+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++
  HL.SW.v1.0.G032151.1  17 FLLKTYDMVDDSATDEIVSWSASKSSFVVWNPPEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFQNEDFVKDQ 96 
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           k+ll++i+r+k
  HL.SW.v1.0.G032151.1  97 KHLLKNIHRRK 107
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-377101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.06E-3412106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5913106IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3017106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEGAQAAASG GSGPAPFLLK TYDMVDDSAT DEIVSWSASK SSFVVWNPPE FSRLLLPTYF  60
KHNNFSSFIR QLNTYGFRKI DPEKWEFQNE DFVKDQKHLL KNIHRRKPIH SHSNPQGSLA  120
DSERATLDEE LEKLSREKSV LEENISHCKQ QLMEKPQLEI VTQRVNGIEK RQDDLHSFLE  180
KAVKDPAFVD YLVQKIESMD FGSYNKKRRL PEVEYSQPVV ENEKAVKDPA FVDYLVQKIE  240
SMDFGAYNKK RRLPEVEYSQ PVVENGFVEN HSNSRAEFGN IVHQDFSNKL RLELSPAVSD  300
MHLVSNSTQS SNEDGEILHR KISEPELRGA RVRAEGLFLA PEPLELSDTG TSFGFKMDSS  360
LSRKQPTNGS PGLRSLQTNL TSSEEGDGQI SCLLNLSLAS SPFEVNNHPY SAGMPQLGQG  420
IRKPLELRFG ANPRESETRF SSMKKTVADG GKNLPSSQEA ATTNQGSVAA PGKVNDVFWE  480
QFLTERPGCS DNEEASSNYR ASAYDDLNDG RLGNGLSRNS KNVEQLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-21710619129Heat shock factor protein 1
5d5v_B1e-21710619129Heat shock factor protein 1
5d5v_D1e-21710619129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097956.10.0heat stress transcription factor A-5
TrEMBLW9RUK30.0W9RUK3_9ROSA; Heat stress transcription factor A-5
STRINGXP_010097956.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-151HSF family protein