PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032136.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21201.1 Da    PI: 5.4438
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032136.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-211561349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           + ks++qvtfskRr gi+ KA ELS LC+ ++avi+fs++gkl+ +
  HL.SW.v1.0.G032136.1 15 LQKKSRKQVTFSKRRSGIFNKAGELSLLCGSDIAVIVFSPNGKLFCF 61
                          5689****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-29564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.441565IPR002100Transcription factor, MADS-box
CDDcd002654.78E-34676No hitNo description
SuperFamilySSF554552.35E-26680IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-19727IPR002100Transcription factor, MADS-box
PfamPF003193.5E-211661IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-192742IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-194263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKRGQGRQKI EIKKLQKKSR KQVTFSKRRS GIFNKAGELS LLCGSDIAVI VFSPNGKLFC  60
FGHPSVDNLI HRYLNGISHT ATSTNDSEQI AAVDGTIRTY VESLEELETE KKQVAEARLL  120
SSLLKEEEEE EKDEFRGGGA WWDEAVDWME LEELEQYVDA LSEMRRKVCA KVQNLTQPKA  180
DDVVLLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5CGN52e-57A0A2P5CGN5_TREOI; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-34AGAMOUS-like 62