PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G032043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 198aa MW: 21338.4 Da PI: 10.0855 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.1 | 1.1e-23 | 21 | 69 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie ksn+qvtfskRr g++ KA ELSvLC+ +vavi+fs++gkl+ + HL.SW.v1.0.G032043.1 21 KNIEKKSNKQVTFSKRRSGLFNKAGELSVLCGSNVAVIVFSPNGKLFCF 69 68********************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-31 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.647 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.32E-36 | 14 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.15E-27 | 14 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-21 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-24 | 23 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-21 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-21 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MASFEITKKK TTQGRQKIEI KNIEKKSNKQ VTFSKRRSGL FNKAGELSVL CGSNVAVIVF 60 SPNGKLFCFG HPSVDDVVHS YLNGTVALPH NNHTIATSST AASYVKAMTE LEEAEKKKKL 120 AVRQARLASL LEKNNGGGEG GSGGAWWAEP INEMGFQELE NHLGMLVDLR SKVSAVAGNK 180 VPALNSELGD WRLGLNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6byy_B | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6byy_C | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6byy_D | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6bz1_A | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6bz1_B | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6bz1_C | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
6bz1_D | 3e-16 | 14 | 94 | 2 | 80 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094362.1 | 8e-47 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2P5CGN5 | 4e-52 | A0A2P5CGN5_TREOI; MADS-box transcription factor | ||||
STRING | XP_010094362.1 | 3e-46 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-23 | AGAMOUS-like 62 |