PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G031884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 7151.36 Da PI: 10.6236 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ienk rqvtf+kRr g++KKA+ELSvLCd+e+ +i+fs +g+lye+ss HL.SW.v1.0.G031884.1 9 KLIENKQSRQVTFAKRRSGLMKKAYELSVLCDVEIGLIVFSGNGRLYEFSS 59 579**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.193 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.6E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-28 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.90E-33 | 2 | 59 | No hit | No description |
PRINTS | PR00404 | 1.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-27 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 64 aa Download sequence Send to blast |
MGRAKVEMKL IENKQSRQVT FAKRRSGLMK KAYELSVLCD VEIGLIVFSG NGRLYEFSSG 60 HSR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-20 | 1 | 59 | 1 | 59 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022776351.1 | 2e-27 | agamous-like MADS-box protein AGL70 | ||||
Refseq | XP_028552867.1 | 2e-27 | developmental protein SEPALLATA 3-like | ||||
Swissprot | Q9SAR1 | 5e-26 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A0A2P5ARC8 | 3e-26 | A0A2P5ARC8_PARAD; MADS-box transcription factor | ||||
TrEMBL | A0A2P5FQG1 | 2e-27 | A0A2P5FQG1_TREOI; MADS-box transcription factor (Fragment) | ||||
STRING | Traes_4BS_59C6DEC88.2 | 1e-26 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-28 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|