PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031565.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 368aa    MW: 41197.3 Da    PI: 5.149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031565.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.6e-23142202259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg +WrKYGqK++ ++e+pr+Y+rCt +   gC+++++v++ +++pk+ ++tY geH+++
  HL.SW.v1.0.G031565.1 142 EDGQAWRKYGQKDILNAEYPRAYFRCTRKydqGCRATRQVQQIQDNPKLYQTTYIGEHTCK 202
                           8**************************998899**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-24128203IPR003657WRKY domain
SuperFamilySSF1182907.32E-23135202IPR003657WRKY domain
PROSITE profilePS5081120.162136199IPR003657WRKY domain
SMARTSM007741.2E-35141203IPR003657WRKY domain
PfamPF031062.0E-22142202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGTCIWPQNL SKRLVEELIQ GREMATQLQL MLHKPPFGEH GGGSVKSSSA EELASKIYNS  60
FTQTLSVVAG YNNINNIIIN SNSSDQTSQV NPDQASHCDE PSSDDSGESK KRSSSAIKDR  120
RGCYKRSRKN SQSWTTTVST LEDGQAWRKY GQKDILNAEY PRAYFRCTRK YDQGCRATRQ  180
VQQIQDNPKL YQTTYIGEHT CKNILKAPQM IKDSEYTWDS APNNLNVVTT TTSHHYNNAS  240
KSIVKESDDA AQEVKPIREP STTTTDSCLS DKLSLDDHNE IINLWPSELK DLELSDPSMG  300
LLCPRLGGSG SDDHDNHVSI MFSFGDRTTC STSATSRSFD MDEFVDTSID FRSCDFEFDE  360
NEFHLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25135202269OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DCX31e-138A0A2P5DCX3_PARAD; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-44WRKY DNA-binding protein 70