PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031514.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CAMTA
Protein Properties Length: 984aa    MW: 110122 Da    PI: 7.2787
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031514.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.33.4e-54201353117
                  CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                           +e ++rwl+++ei++iL n++k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+ee
  HL.SW.v1.0.G031514.1  20 QEaQHRWLRPTEICEILRNYRKFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEE 108
                           5559************************************************************************************* PP

                  CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                           n+ fqrr+yw+L+  le+ivlvhy+ev
  HL.SW.v1.0.G031514.1 109 NEGFQRRSYWMLDGLLENIVLVHYREV 135
                           *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.34415141IPR005559CG-1 DNA-binding domain
SMARTSM010764.5E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038598.0E-4821134IPR005559CG-1 DNA-binding domain
CDDcd001024.19E-5451539No hitNo description
Gene3DG3DSA:2.60.40.102.0E-6452527IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.07E-17452538IPR014756Immunoglobulin E-set
PfamPF018331.7E-6453537IPR002909IPT domain
SuperFamilySSF484031.4E-17610730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-16624731IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.024624739IPR020683Ankyrin repeat-containing domain
CDDcd002046.86E-15624727No hitNo description
PROSITE profilePS500889.805668700IPR002110Ankyrin repeat
SMARTSM002480.009668700IPR002110Ankyrin repeat
SMARTSM00248480707736IPR002110Ankyrin repeat
SuperFamilySSF525409.29E-10821892IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.021840862IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.785841870IPR000048IQ motif, EF-hand binding site
PfamPF006120.0011842861IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0017863885IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.798864892IPR000048IQ motif, EF-hand binding site
PfamPF006128.6E-5866885IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MAELKRFLPN QQLDLGQILQ EAQHRWLRPT EICEILRNYR KFQLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEENE GFQRRSYWML  120
DGLLENIVLV HYREVREGYK SGISRVQATP RPPFEHFPNS CGQANSPVPT IQNSFATNPN  180
RVDWNGPTLS LEIEDVDSGE NSGASLTQTA FGSISHNAPL LSDGVTGKVD GNVLGVAELS  240
RNHTDSWYPG FKLYHSAGSS LWAGSHGSTK REESMHDQKC DVEEPGGAEF IIHKLTDSKL  300
DVDSKIHDIV SYSDKVIPST GILVAPLVSK RDIQVSQDLG FNSTRPPFQC YSDPQMVATF  360
TDEVEKKSED KVVTVCNNES AELKKLDSFG RWMDKEIGVD CDDSLMASDS GNYWNTLDAE  420
NDDKEVSSLS HHMQLEIDSL GPSLSQEQLF SICDISPDWT YPGVETKVLI AGRFLGSKKQ  480
SSETKWGCMF GEIEVPAEVV IDNVIRCKTP LHAPGRVPFY VTCSNRLACS EVREFEYREK  540
PQVIAENRAP EDELRLQIRL GKLLNLSPEM KSLNCSGLNC DKCNLIGKKP SMRIKTNHLT  600
SSDILIQNLL KDRLHQWLVF KTHEEGKGPN VFDDEGLGVI HLAAALGYQW AIGPIIAAGV  660
SPNFRDARGK TALHWASCFG REETVVALVR LGAAPGAVND PTPAFPGGQT AADLASINGH  720
KGIAGYLAEA DLTSHLSSLN INENVADIHD AIVSAESAID TESKVVSSEL GIDNHFLEGS  780
LAAFRKSAHT AALIQAAFRN HLLCHKQLTK SRDDVSNDSV DLVVLDSLNK VQKSSHFEDY  840
LHSAAKKIQK KYRGWKGRKE FLHIRSRIVK IQAHVRGHQV RKQYKKLVWS VSILEKVILR  900
WRRKGSGLRG FRVEKSTEDE SRGTKRSDDY EYLIIGRKQK YDAVDKALAR VKSMVRHPEA  960
REQYMRLVTN FEKFEIGEDE SSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023492.10.0calmodulin-binding transcription activator 2 isoform X2
TrEMBLA0A2P5F5K50.0A0A2P5F5K5_TREOI; Serine/threonine protein kinase
STRINGXP_010099702.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1