PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G031283.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 789aa MW: 86276.4 Da PI: 6.374

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G031283.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	81	136	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k HL.SW.v1.0.G031283.1 81 KKKYHRHTPNQIQELESFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 136 79999************************************************999 PP
2	START	194.6	4.8e-61	292	516	2	206
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 la++a++el+k+a+ae p+W kss e++n +e++++f++ + + +ea r+s vv+ ++ lve+l+d + +W e+++ HL.SW.v1.0.G031283.1 292 LALAAMDELLKLAQAEGPMWIKSSnggskEMLNHEEYMRTFPPCIGakpngYVSEATRDSSVVIINSLALVETLMDAN-RWVEMFPcli 379 6899*************************************99999**************************.****** PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158 +a+t+e+is g galq m aelq+lsplvp R f+R+++q+g+g+w++vdvS+d +++ + s+ +++lpSg+l+++++ HL.SW.v1.0.G031283.1 380 sRASTIETISAGmggtrnGALQAMHAELQVLSPLVPlRPLKFIRFCKQHGEGVWAVVDVSIDINREALNADSYFQCRRLPSGCLVQDMP 468 **************************************************************988**************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +g+skvtwveh +++++ +h+++rs ++sg+ +ga++w+atlqrqce+ HL.SW.v1.0.G031283.1 469 DGYSKVTWVEHSEYDASGVHQMFRSYISSGMGFGAQRWLATLQRQCEC 516 ********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.67E-20	67	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-21	67	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	78	138	IPR001356	Homeobox domain
SMART	SM00389	4.9E-18	80	142	IPR001356	Homeobox domain
CDD	cd00086	3.15E-19	81	138	No hit	No description
Pfam	PF00046	3.5E-18	81	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.422	282	519	IPR002913	START domain
SuperFamily	SSF55961	2.56E-33	283	517	No hit	No description
CDD	cd08875	6.40E-117	286	515	No hit	No description
SMART	SM00234	3.0E-50	291	516	IPR002913	START domain
Pfam	PF01852	7.3E-53	292	516	IPR002913	START domain
SuperFamily	SSF55961	7.8E-20	544	780	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MPHRAIARPY FVSPSIMPNS LKTSSRKMDN HGEMGLLGEN FDLGMIGRIR DDGYESRSGS 60 DNLEGASGDD QDAGDDQPPR KKKYHRHTPN QIQELESFFK ECPHPDEKQR LELSRRLSLE 120 TKQVKFWFQN RRTQMKTQLE RHENIILRQE NDKLRAENNM IKDAMSNPMC NQCGGPAIPG 180 QISFEEHQLR IENARLKDEL SRICSLANKF LGRPLSSLVA PLPLPSSAGL ELAVGRNGMG 240 GLNAIGPPLP MGLDLGDGVS SSAHMMPLVK SSMGMNVFGN EIPFERSMFI DLALAAMDEL 300 LKLAQAEGPM WIKSSNGGSK EMLNHEEYMR TFPPCIGAKP NGYVSEATRD SSVVIINSLA 360 LVETLMDANR WVEMFPCLIS RASTIETISA GMGGTRNGAL QAMHAELQVL SPLVPLRPLK 420 FIRFCKQHGE GVWAVVDVSI DINREALNAD SYFQCRRLPS GCLVQDMPDG YSKVTWVEHS 480 EYDASGVHQM FRSYISSGMG FGAQRWLATL QRQCECLATL MSPSIPNEDQ IAVSSGGRRS 540 LLKLAKRMVD NFCAGVCAST VRKWDKLRVD NVGEDVRVMT RKSMDDPGEP PGIILSAATS 600 VWIPVSQKRL FEFLRDEQLR SEWDILSNGG PMQEMVHITK GQRHGNHVSL LRAGSIGAND 660 STMLILQETW TDASGSMVVY APVDSAAINV VMHGGDSAYV ALLPSGFAIV PDGTSQSGYV 720 SGNNESSSLA LVKGEGDDSG GCILTVGFQI LVNSLPSAKL TVESVETVNN LISCTIQKIK 780 AALSGPSA*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MPHRAIARPY FVSPSIMPNS LKTSSRKMDN HGEMGLLGEN FDLGMIGRIR DDGYESRSGS  60
DNLEGASGDD QDAGDDQPPR KKKYHRHTPN QIQELESFFK ECPHPDEKQR LELSRRLSLE  120
TKQVKFWFQN RRTQMKTQLE RHENIILRQE NDKLRAENNM IKDAMSNPMC NQCGGPAIPG  180
QISFEEHQLR IENARLKDEL SRICSLANKF LGRPLSSLVA PLPLPSSAGL ELAVGRNGMG  240
GLNAIGPPLP MGLDLGDGVS SSAHMMPLVK SSMGMNVFGN EIPFERSMFI DLALAAMDEL  300
LKLAQAEGPM WIKSSNGGSK EMLNHEEYMR TFPPCIGAKP NGYVSEATRD SSVVIINSLA  360
LVETLMDANR WVEMFPCLIS RASTIETISA GMGGTRNGAL QAMHAELQVL SPLVPLRPLK  420
FIRFCKQHGE GVWAVVDVSI DINREALNAD SYFQCRRLPS GCLVQDMPDG YSKVTWVEHS  480
EYDASGVHQM FRSYISSGMG FGAQRWLATL QRQCECLATL MSPSIPNEDQ IAVSSGGRRS  540
LLKLAKRMVD NFCAGVCAST VRKWDKLRVD NVGEDVRVMT RKSMDDPGEP PGIILSAATS  600
VWIPVSQKRL FEFLRDEQLR SEWDILSNGG PMQEMVHITK GQRHGNHVSL LRAGSIGAND  660
STMLILQETW TDASGSMVVY APVDSAAINV VMHGGDSAYV ALLPSGFAIV PDGTSQSGYV  720
SGNNESSSLA LVKGEGDDSG GCILTVGFQI LVNSLPSAKL TVESVETVNN LISCTIQKIK  780
AALSGPSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024028635.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2P5CZI4	0.0	A0A2P5CZI4_TREOI; Octamer-binding transcription factor
STRING	XP_010107411.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]