PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 32998.4 Da PI: 4.2642 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.6e-21 | 68 | 121 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ +++++LAkklgL+ rqV vWFqNrRa++k HL.SW.v1.0.G030939.1 68 KKRRLTPEQVHLLEKSFESENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 121 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.4 | 3.4e-42 | 67 | 158 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l+++ + + k++++L++ HL.SW.v1.0.G030939.1 67 EKKRRLTPEQVHLLEKSFESENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDSLSANYDLILKQNDNLKS 155 69**************************************************************************************9 PP HD-ZIP_I/II 90 elk 92 e++ HL.SW.v1.0.G030939.1 156 EVA 158 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.74E-20 | 53 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.864 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-20 | 66 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-19 | 68 | 124 | No hit | No description |
Pfam | PF00046 | 4.5E-18 | 68 | 121 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 69 | 130 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.6E-6 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.7E-14 | 123 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MESGRLFFDP TSSCHGGNML FLGNGDPVFR GPTRSMMSMD ESSKRRPFFS SPEDLYDEDY 60 YDEQLPEKKR RLTPEQVHLL EKSFESENKL EPDRKTQLAK KLGLQPRQVA VWFQNRRARW 120 KTKQLERDYD LLKSTYDSLS ANYDLILKQN DNLKSEVAFL MEKLKAKEEA GGGGEVAAAA 180 APVQKADETV EEDMSDIRGM QLSVKAEDRL STGSGGSAVV DEESPQLVDS GDSCYFQSCV 240 QYSAGCLDAA AVDGVPSEED DGSEDGRSYF SDVFAAVDQQ QQVEDGEALG WWVWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 115 | 123 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111761.1 | 1e-148 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 8e-98 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2P5B4T6 | 1e-173 | A0A2P5B4T6_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010111761.1 | 1e-148 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-86 | homeobox 1 |
Publications ? help Back to Top | |||
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