PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 296aa    MW: 32998.4 Da    PI: 4.2642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030939.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.6e-2168121356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k++++t+eq++ Le+ Fe+++++  +++++LAkklgL+ rqV vWFqNrRa++k
  HL.SW.v1.0.G030939.1  68 KKRRLTPEQVHLLEKSFESENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWK 121
                           5678*************************************************9 PP

2HD-ZIP_I/II131.43.4e-4267158192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl+ eqv+lLE+sFe+e+kLep+rK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l+++ + + k++++L++
  HL.SW.v1.0.G030939.1  67 EKKRRLTPEQVHLLEKSFESENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDSLSANYDLILKQNDNLKS 155
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           e++
  HL.SW.v1.0.G030939.1 156 EVA 158
                           985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.74E-2053125IPR009057Homeodomain-like
PROSITE profilePS5007117.86463123IPR001356Homeobox domain
SMARTSM003891.9E-2066127IPR001356Homeobox domain
CDDcd000861.64E-1968124No hitNo description
PfamPF000464.5E-1868121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-2269130IPR009057Homeodomain-like
PRINTSPR000314.6E-694103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000314.6E-6103119IPR000047Helix-turn-helix motif
PfamPF021837.7E-14123164IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESGRLFFDP TSSCHGGNML FLGNGDPVFR GPTRSMMSMD ESSKRRPFFS SPEDLYDEDY  60
YDEQLPEKKR RLTPEQVHLL EKSFESENKL EPDRKTQLAK KLGLQPRQVA VWFQNRRARW  120
KTKQLERDYD LLKSTYDSLS ANYDLILKQN DNLKSEVAFL MEKLKAKEEA GGGGEVAAAA  180
APVQKADETV EEDMSDIRGM QLSVKAEDRL STGSGGSAVV DEESPQLVDS GDSCYFQSCV  240
QYSAGCLDAA AVDGVPSEED DGSEDGRSYF SDVFAAVDQQ QQVEDGEALG WWVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111761.11e-148homeobox-leucine zipper protein HAT5
SwissprotQ022838e-98HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2P5B4T61e-173A0A2P5B4T6_TREOI; Octamer-binding transcription factor
STRINGXP_010111761.11e-148(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-86homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]