PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 23421.2 Da PI: 7.3325 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.2 | 9.5e-46 | 23 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ HL.SW.v1.0.G030891.1 23 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEDQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDA 111 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++lal+++e HL.SW.v1.0.G030891.1 112 LQTQLALAQAE 122 ******99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.239 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-45 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGSYLEIYII MKESGRKQGA MSPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG 60 ASNVNKMLQE LPEDQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLALAQ 120 AEVVHMRMSQ FSPTPNHNNN PHQSTDSITT HHHHHPSTDQ NNNNNKHHIM SNTTSHHHHL 180 HHQTKSFFSL DMAVDHHQAN MGESLWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-49 | 19 | 136 | 7 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-49 | 19 | 136 | 7 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007212145.1 | 1e-95 | LOB domain-containing protein 4 | ||||
Refseq | XP_008226099.1 | 1e-95 | PREDICTED: LOB domain-containing protein 4 | ||||
Refseq | XP_021828556.1 | 1e-95 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 2e-68 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2P5CCR0 | 1e-99 | A0A2P5CCR0_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_008226099.1 | 4e-95 | (Prunus mume) | ||||
STRING | EMJ13344 | 4e-95 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-64 | LOB domain-containing protein 4 |