PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030866.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GATA | ||||||||
Protein Properties | Length: 384aa MW: 41644.2 Da PI: 4.5274 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.8 | 7.4e-14 | 213 | 249 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ HL.SW.v1.0.G030866.1 213 CQHCGISEkcTPAMRRGPGGPRSLCNACGLMWANKGT 249 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 2.1E-7 | 75 | 110 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.247 | 75 | 110 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.8E-10 | 78 | 109 | IPR010399 | Tify domain |
Pfam | PF06203 | 7.9E-15 | 143 | 185 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.451 | 143 | 185 | IPR010402 | CCT domain |
SMART | SM00401 | 2.1E-10 | 207 | 260 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.9E-13 | 211 | 254 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 5.23E-11 | 211 | 264 | No hit | No description |
CDD | cd00202 | 5.83E-14 | 212 | 255 | No hit | No description |
Pfam | PF00320 | 8.0E-12 | 213 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 213 | 240 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDTVNPQPLQ ARPFVAEEGG QIVQFTVPGE SNEVGFDVAV GGGGGGGRID SMNGGVGIGD 60 APRDFAMAAY RNSAMPSRTS ELTIAFEGEV YVFPAVTPEK VQAVLLLLGG CDVPSCAPSS 120 EFIVEKNSRV TSDLTRSSKI SRRIASLVRF REKRKERCFE KKILYSCRKE VAQRMHRKNG 180 QFASSKESSC KTDVGNWDSS DGTPCAESVL RRCQHCGISE KCTPAMRRGP GGPRSLCNAC 240 GLMWANKGTL RDLSKSGRAV TFYQNETETT ADIKPLAVEA ENSYHEQDDQ GSPDEIKPVS 300 LDSENPSLRL SDQDLQDMRE IQGTNAEGVT DHVSIQVENS SVELDEQEAL DEFANTSGPE 360 FDIPENFDDQ ISVFSSLTSN MGD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031736.1 | 0.0 | GATA transcription factor 24 | ||||
TrEMBL | A0A2P5FKM1 | 0.0 | A0A2P5FKM1_TREOI; GATA transcription factor | ||||
STRING | XP_008237241.1 | 1e-146 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-52 | ZIM-like 1 |