PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 525aa MW: 56935.8 Da PI: 7.9867 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.1 | 2.3e-36 | 88 | 262 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk++eWL+++a ai el+++ HL.SW.v1.0.G030527.1 88 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGFDQPSKAVEWLINAASDAIAELPSLsssfpdtpkqlsdekrasvgteqgf 176 689*************************************************************9999999999999999999888877 PP TCP 66 ..............ssssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmr 131 + ++++++++++n++++ + +++a+s+ s++s+ s l+l++ r kar+rarer ++++ HL.SW.v1.0.G030527.1 177 dsaevemdgtdqgmN------YqnhqdQQQQNQNQNQNQQHNLSLSKSACSSTSETSKGSGLSLSRsdirVNRVKARERARERAAKEKE 259 777776664433221......12121334444444444444566666667777777777777777753445669********7777666 PP TCP 132 ikn 134 ++n HL.SW.v1.0.G030527.1 260 KEN 262 554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-42 | 89 | 260 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.701 | 90 | 148 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.946 | 240 | 258 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MEVEEIQAQA CKYSRIGNGR SDSSNIKLLG QKGGNDHYPD DEVDGREIKR VAGGGGAADL 60 SVINAGGGAN RLRGWHHSSR IIRVSRASGG KDRHSKVWTS KGLRDRRVRL SVTTAIQFYD 120 LQDRLGFDQP SKAVEWLINA ASDAIAELPS LSSSFPDTPK QLSDEKRASV GTEQGFDSAE 180 VEMDGTDQGM NYQNHQDQQQ QNQNQNQNQQ HNLSLSKSAC SSTSETSKGS GLSLSRSDIR 240 VNRVKARERA RERAAKEKEK ENESRIVHRS SSHHHNNSNN INSISQNSTF TELLTAGMSN 300 VNDNNTSSPT QQNPGATGGG GGAHMDYFAS GLLGLSSSSS RAQQQQQHHQ SSGFSGQIHL 360 GNSLPSQTMS MSMSMSPFGD HHNHHQHQNH NNGDQTVLPQ HFSFVPEHLI PVATSQPNGN 420 GGDYNLNFSI SSGLAGFNRG TLQSNSPSLL PHFQRFSPID GTNNVPFFIG AAAPAAAAPP 480 MENHHHSNHN HHHQFSAGFV DGRLQLCYGD GNRHSDQQKG KGKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 95 | 149 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 95 | 149 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875888.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_015875894.1 | 0.0 | transcription factor TCP2 | ||||
Refseq | XP_015875904.1 | 0.0 | transcription factor TCP2 | ||||
TrEMBL | A0A2P5EA21 | 0.0 | A0A2P5EA21_TREOI; TCP transcription factor | ||||
STRING | EOY27651 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |