PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRAS | ||||||||
Protein Properties | Length: 453aa MW: 50957.9 Da PI: 6.3003 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 465 | 4.1e-142 | 27 | 449 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++ +see+ ++k+f+e++P HL.SW.v1.0.G030315.1 27 LIHLLLTCANHVASGSLENANIALEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTRMF--LVSEEILVRKVFFELFP 113 689*************************************************************888876..6**************** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +lk++++++NqaI ea+ege++vHiiD+ +s+++QW+aLlq L++R+egpp+lRiT+v++ +ke le++++rL + Ae+l++pf+f HL.SW.v1.0.G030315.1 114 FLKVAFVLTNQAITEAIEGEKMVHIIDLHASEPAQWVALLQVLSARTEGPPHLRITAVHQ----QKEVLEQMAHRLIDEAEKLDIPFQF 198 ************************************************************....9************************ PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214 n+ v+++le+l++e+Lrvk+gEal+V++vlqlh+ll HL.SW.v1.0.G030315.1 199 NL-VVSKLENLDMEKLRVKTGEALVVSSVLQLHSLLasddellrkksplgpktlngtyfprafqvnqstlgellekdfvngcspspdsa 286 *9.799**********************************************************************************9 PP GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 s++ + + d +L+++++l Pk++vv+eq+++hn+ +++er+leal+ y+alfd+le++++r+ er kvE++l+g+ei+n++ac HL.SW.v1.0.G030315.1 287 sswPLSLNASGKMDGFLNALWGLTPKLMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESTVSRTPLERLKVEKMLFGEEIKNIIAC 375 977333333446777************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eg er+erhe+l kW +rl++aGF +vpls++ ++qa++ll+ ++ dgy++ e++g ++++W+drpL+s+SaWr HL.SW.v1.0.G030315.1 376 EGPERKERHEKLDKWIQRLDSAGFANVPLSYYGMMQARRLLQGYGCDGYKIREDNGNVLICWQDRPLYSISAWR 449 *************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.949 | 1 | 429 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-139 | 27 | 449 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MMSLSPSLGS PYPWLKELKS EERGLYLIHL LLTCANHVAS GSLENANIAL EQISQLASPD 60 GDTMQRIAAY FTEALADRIL KSWPGLHKAL NSTRMFLVSE EILVRKVFFE LFPFLKVAFV 120 LTNQAITEAI EGEKMVHIID LHASEPAQWV ALLQVLSART EGPPHLRITA VHQQKEVLEQ 180 MAHRLIDEAE KLDIPFQFNL VVSKLENLDM EKLRVKTGEA LVVSSVLQLH SLLASDDELL 240 RKKSPLGPKT LNGTYFPRAF QVNQSTLGEL LEKDFVNGCS PSPDSASSWP LSLNASGKMD 300 GFLNALWGLT PKLMVVTEQD SNHNGLTLME RLLEALYSYA ALFDCLESTV SRTPLERLKV 360 EKMLFGEEIK NIIACEGPER KERHEKLDKW IQRLDSAGFA NVPLSYYGMM QARRLLQGYG 420 CDGYKIREDN GNVLICWQDR PLYSISAWRC RK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-41 | 11 | 451 | 2 | 380 | Protein SCARECROW |
5b3h_D | 5e-41 | 11 | 451 | 2 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097452.2 | 0.0 | scarecrow-like protein 3 isoform X2 | ||||
Refseq | XP_024022054.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2P5FIP7 | 0.0 | A0A2P5FIP7_TREOI; GRAS transcription factor | ||||
STRING | XP_010097452.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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