PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LSD | ||||||||
Protein Properties | Length: 138aa MW: 14712.8 Da PI: 4.7147 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 27.4 | 5.8e-09 | 99 | 116 | 1 | 18 |
zf-LSD1 1 CggCrtlLsYPrGApsVR 18 Cg+CrtlL YP+GA+ V+ HL.SW.v1.0.G030211.1 99 CGHCRTLLKYPPGARQVH 116 ***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.0E-8 | 96 | 115 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-6 | 99 | 115 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MEINQVDEDE DEGPPPGYQS ILPSPQPQPP PPSSPLQLAP QPPPPPLPPS SPLRLASEPP 60 PPPSSSPLKL APEPPPPMPT TGLTPMLKTT SFEIAQMICG HCRTLLKYPP GARQVHNERP 120 PWSVQQGQPP PGPNQCY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |