PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029945.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 424aa    MW: 47600.2 Da    PI: 8.2501
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029945.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.5e-3275128255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  HL.SW.v1.0.G029945.1  75 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMSIKGLSIAHVKSHLQMYRS 128
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2971129IPR009057Homeodomain-like
PROSITE profilePS5129412.28271131IPR017930Myb domain
SuperFamilySSF466891.97E-1473129IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2275130IPR006447Myb domain, plants
PfamPF002491.0E-876127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MINMVVESRT SDSECSKTSF EYEDESGEEN EDESTKPNNK DTNNGGLSSS NSTVEESDKV  60
KSSSSVRPYV RSKMPRLRWT PDLHLRFVHA VERLGGQERA TPKLVLQLMS IKGLSIAHVK  120
SHLQMYRSKK IDDAGQVIGS HDHHHRHLLD CGDRNIFNLS QLPMLQGYKQ TSHSSNFRYG  180
FDDPSWTSFG NLRHSRAGFY ALSAEAERKI LASNWGSSTN ACNFPSKNNI SSTISSNLIN  240
HDQHSSWRKA HNKLTIKDND HDHHNNHLQH RPSSTPHQTQ FNTPLIDLNS IAHLQVNKAK  300
ELTNFLSSNN NVTHSDTVLN TTTTTTSTST SMKRKASSDS NNHHHHHQLD LDLSLRLTTT  360
SSDVVMDIDR DHKRKRSSGD EVDSSLLSLS LNSSNSSSKR SKNDDHHHGE MQARRASTLD  420
LTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1776130458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092813.11e-110two-component response regulator ORR22
TrEMBLW9R2E61e-109W9R2E6_9ROSA; Putative Myb family transcription factor
STRINGXP_010092813.11e-110(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-52G2-like family protein