PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029800.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 376aa    MW: 42257.1 Da    PI: 6.3699
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029800.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.6e-07546237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                          + r+C+ +++  + l+C+ ++  lC +C le H g       H
  HL.SW.v1.0.G029800.1  5 RRRICDYCNDATALLYCRADSAKLCFSCDLEVH-GtnqlftkH 46
                          5789*****************************.435566666 PP
2zf-B_box261.9e-085092441
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41
                          + C+ ++  ++++fC ++++ +C++C  e Hk      H+++p
  HL.SW.v1.0.G029800.1 50 QLCDACHGSPASIFCSSDSSVFCQNCDWERHKPslslvHDRRP 92
                          68*****************************768888888877 PP
3CCT621.9e-21331373143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           Re a++RYkeKrktR++eK irYesRK++AesR R+KGrF+k 
  HL.SW.v1.0.G029800.1 331 REGAISRYKEKRKTRRYEKCIRYESRKVRAESRIRIKGRFAKI 373
                           99***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.192451IPR000315B-box-type zinc finger
SMARTSM003361.1E-12451IPR000315B-box-type zinc finger
PfamPF006431.9E-5646IPR000315B-box-type zinc finger
CDDcd000216.03E-7751No hitNo description
PROSITE profilePS5011910.4664793IPR000315B-box-type zinc finger
PfamPF006433.6E-65092IPR000315B-box-type zinc finger
CDDcd000217.54E-75193No hitNo description
SMARTSM003360.0865293IPR000315B-box-type zinc finger
PfamPF062033.6E-15331372IPR010402CCT domain
PROSITE profilePS5101714.515331373IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDSQRRRICD YCNDATALLY CRADSAKLCF SCDLEVHGTN QLFTKHSRFQ LCDACHGSPA  60
SIFCSSDSSV FCQNCDWERH KPSLSLVHDR RPLEGFNGCP SVSELLGILG FEDFDKKALI  120
SNEERDGSSG FQPGDFLDLS LWDTPSIVGL DDLIVSSSSH NFQAMGIPPL PKNRNAVCGQ  180
HKEEVIAQLR KLAKIEPNTN FDNGDAAKFL NCFESLAPEQ SVQPGKICIG SQYDAGAEPV  240
IGPTYETPSC QWSIDGGETA DQKFLVDKSL SSHLKTSYRD FEKYSDIDDT WRHVNDDGQN  300
EQPQHPISSS LSRALSDFHK VASYELTSQE REGAISRYKE KRKTRRYEKC IRYESRKVRA  360
ESRIRIKGRF AKIDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112745.11e-156zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2P5FFU70.0A0A2P5FFU7_TREOI; Zinc finger-domain containing protein
STRINGXP_010112745.11e-156(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-79B-box type zinc finger protein with CCT domain