PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G029763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 38805.5 Da PI: 4.5506 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 7.2e-11 | 159 | 202 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ErrRR r+++++ Lr+l+P+ +K++Ka+i+ Av Y+++Lq HL.SW.v1.0.G029763.1 159 ISERRRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 202 67*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.091 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-16 | 154 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 154 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.28E-11 | 154 | 204 | No hit | No description |
SMART | SM00353 | 4.6E-14 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-8 | 159 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MMDNINDFEL HDFIADSNFD QLIDLIRGEN EDPLVNFGCD DLINGSNNFV HATINHHDHP 60 FLGVDRPLNV ATDNNNHVFG FNATPMVSSD PNSLSFIDTV MPEYFDGEIL NMDMVDKGDG 120 DDDDEEDDGD DSSGTTTTTT TTPNASSKRP KVDRSRTLIS ERRRRGRMKE KLYALRSLVP 180 NITKMDKASI VGDAVLYVQD LQTQSKKLKA EIASLEASLE EVERYQGSTT ENSKKIKDVK 240 TNGSLAKMKI ITQMDMFQVE ERGFYVKVVC NKGERAGISL YKALESLTNF NIQSSNLATV 300 SDTFVLTFTL KVLKECDQRE PINLPNLKLW VTGAFINQGF ELKTAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 160 | 223 | 12 | 75 | Transcription factor MYC2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Essential protein involved in iron uptake responses. Regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. Confers enhanced iron mobilization responses at low iron supply. {ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:16117851}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In roots by iron deficiency. Repressed by cytokinins. Induced by cold, UV, ethylene (ACC), jasmonic acid (JA), flagellin, and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15531708, ECO:0000269|PubMed:15539473, ECO:0000269|PubMed:15556641, ECO:0000269|PubMed:18397377}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024031455.1 | 1e-142 | transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
Swissprot | Q0V7X4 | 1e-91 | FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | ||||
TrEMBL | A0A2P5FTK3 | 1e-158 | A0A2P5FTK3_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010111848.1 | 1e-142 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3679 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 2e-62 | FER-like regulator of iron uptake |