PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029665.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 475aa    MW: 53459.7 Da    PI: 6.1633
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029665.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.71.5e-139544711374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++cA++v++g+le+a+  L+++s+l spdgd+mqR++ayfteALa r+++s+++ly+a+++++    ++see+ +++lf+e++P
  HL.SW.v1.0.G029665.1  54 LIQLLVACANHVAAGSLENANIGLEHISHLTSPDGDSMQRIVAYFTEALADRMLKSWPGLYRAFNSTKIV--SVSEEILIQRLFFELCP 140
                           689*************************************************************998887..6**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lk++++++NqaI ea+ege+++HiiD++ sq++Q + Llq+L++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+f
  HL.SW.v1.0.G029665.1 141 FLKLAYVITNQAIFEAMEGEKMIHIIDLNSSQPAQMIDLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQF 225
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................................d 215
                           n+ ++++le+l++e+Lrvk+gEalaV+ vlqlh+ll                                                    +
  HL.SW.v1.0.G029665.1 226 NP-IVSKLENLDVESLRVKTGEALAVSAVLQLHSLLasdddihkrhspsmsshlqklslmnqrplkdwlekdshsllsmspesalsplS 313
                           **.7999***************************************************************************9977542 PP

                  GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                             vs + +  ++L+++++lsPkv+vv+eqe++ n+ +++er++eal +y alfd+le+++pr+s er+kvE++l+g+ei+n++acegae
  HL.SW.v1.0.G029665.1 314 --VSGSPKMGSFLSALWGLSPKVMVVTEQESNNNGFTLMERISEALFFYGALFDCLESTIPRTSIERQKVEKMLFGEEIKNIIACEGAE 400
                           ..333335688****************************************************************************** PP

                  GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           r+erhe+lekW  rle aGF+ vpls++ ++qa +llr+ + + gy+++ee+g+l+++W+drpL+svSaWr
  HL.SW.v1.0.G029665.1 401 RTERHEKLEKWILRLELAGFGRVPLSYQGMMQATRLLRQSHvFSGYKIKEENGCLIICWQDRPLFSVSAWR 471
                           **********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.19328450IPR005202Transcription factor GRAS
PfamPF035145.1E-13754471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVQPFLVGEM IKDEGSSSVT SSPLQFCHLL PSPGLGSSYP WMREPKSEER GLYLIQLLVA  60
CANHVAAGSL ENANIGLEHI SHLTSPDGDS MQRIVAYFTE ALADRMLKSW PGLYRAFNST  120
KIVSVSEEIL IQRLFFELCP FLKLAYVITN QAIFEAMEGE KMIHIIDLNS SQPAQMIDLL  180
QTLSARPEGP PHLRITGIHE QKEVLEQMAL RLTEEAEKLD IPFQFNPIVS KLENLDVESL  240
RVKTGEALAV SAVLQLHSLL ASDDDIHKRH SPSMSSHLQK LSLMNQRPLK DWLEKDSHSL  300
LSMSPESALS PLSVSGSPKM GSFLSALWGL SPKVMVVTEQ ESNNNGFTLM ERISEALFFY  360
GALFDCLEST IPRTSIERQK VEKMLFGEEI KNIIACEGAE RTERHEKLEK WILRLELAGF  420
GRVPLSYQGM MQATRLLRQS HVFSGYKIKE ENGCLIICWQ DRPLFSVSAW RFRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-64424737381Protein SCARECROW
5b3h_A3e-64424736380Protein SCARECROW
5b3h_D3e-64424736380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106407.10.0scarecrow-like protein 3
RefseqXP_024028049.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5DM640.0A0A2P5DM64_PARAD; GRAS transcription factor
STRINGXP_010106407.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]