PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G029633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 30564 Da PI: 8.5956 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 13 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+WvAeI+d k+ r +lg+f+taeeAa+a+++a+ l+g HL.SW.v1.0.G029633.1 13 KFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFDTAEEAARAYDEAACLLRG 62 799******.7*********33....36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-38 | 13 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-28 | 13 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-32 | 13 | 71 | No hit | No description |
PROSITE profile | PS51032 | 20.06 | 13 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-13 | 13 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-20 | 13 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0035865 | Biological Process | cellular response to potassium ion | ||||
GO:0048528 | Biological Process | post-embryonic root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRATAIKAT KNKFVGVRQR PSGKWVAEIK DTTKKIRMWL GTFDTAEEAA RAYDEAACLL 60 RGSNTRTNFA NRVPTDSQLS LRIRNLLNRK KSLKQSNPTT VSTSVVSVGS NTMRDCFHFN 120 NTNQKSNSTT TNYASSSSLS GFINQSNLVF DGAYKPDMSN CIVEPHQGMA HFDYTWPFPI 180 GFDQIPMTHQ GMELTKGVDS LSTSPSSSSS QSSSSSSTAA AEAEVEFTEF GRMKLERQIS 240 ASLYAMNGVN EHIGYAYDST TDAHWDLSAF YQLFCPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-16 | 4 | 69 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00521 | DAP | Transfer from AT5G19790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010112638.1 | 1e-115 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | A0A2P5FJX0 | 1e-135 | A0A2P5FJX0_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010112638.1 | 1e-114 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3341 | 30 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-48 | related to AP2 11 |