PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G029631.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 225aa MW: 25038 Da PI: 6.5196

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G029631.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7.2e-31	1	52	4	55
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rWt+eLHe+Fv av+ LGG+e+AtPk il+lmkv+gLt++hvkSHLQkYR+ HL.SW.v1.0.G029631.1 1 MRWTQELHEAFVGAVNTLGGNERATPKGILNLMKVPGLTIYHVKSHLQKYRT 52 79*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-28	1	54	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-23	1	52	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.86E-16	1	52	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.72	1	55	IPR017930	Myb domain
Pfam	PF00249	5.4E-8	1	51	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-12	83	123	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MRWTQELHEA FVGAVNTLGG NERATPKGIL NLMKVPGLTI YHVKSHLQKY RTARYKPELS 60 EGTNEKKSPT AEDVRSQELS TSMGITEALR LQVELQKRLH EQLELQIEEQ GKYLEKMFDQ 120 HKKMETKSKA SSSTSHDHKN PLSKVQENNK SKVSEGASSK TGISSSNAKP KPDESFIDPS 180 EKGKAHDETK TWGEHELGNE ESDLHGIPME FTVAGGDILS LDID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-28	1	56	5	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102208.1	7e-79	protein PHR1-LIKE 1 isoform X2
Swissprot	F4J3P7	6e-53	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A2P5A6T3	4e-92	A0A2P5A6T3_TREOI; Octamer-binding transcription factor
STRING	XP_010102208.1	3e-78	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	4e-46	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]