PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029557.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 454aa    MW: 49564 Da    PI: 5.428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029557.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.3e-113914503374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                            lLl+cAe v+ ++l++a  lL ++ el+sp g++ +R+ ayf+ AL+ar+ +s  + y+ l++++ + ++s + ++al+ ++ +sP++
  HL.SW.v1.0.G029557.1  91 GLLLQCAESVAMDNLNNAGDLLPEIAELSSPFGTSPERVGAYFAHALQARVISSYLGRYSPLTTKTLNLTQSHRIFNALQSYNSISPLV 179
                           58*************************************************************************************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                           kfsh+taNqaI +a++g +rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++
  HL.SW.v1.0.G029557.1 180 KFSHFTANQAIFQALDGVDRVHVIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGS----STELLESTGRRLADFANSLGLPFEFHP 264
                           **********************************************************....99************************* PP

                  GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                           l  k  +  ++++L+v+p+Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd
  HL.SW.v1.0.G029557.1 265 LEGKIGSITDPSQLDVRPNEATVVHWMH--HCLYDITGSDLG----TLRLLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFD 346
                           988899999*****************99..777777777777....9*********************.789***************** PP

                  GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                           +l    +++s er++vE++l+g ei+n+va  g +r+ + + + +W e l+++GF+pv+l+ + a+qa+lll +++++gy++ eesg+l
  HL.SW.v1.0.G029557.1 347 ALGDVSGADSLERHMVEQQLFGCEIRNIVAVGGPKRTGEVK-VDRWGEELKRVGFEPVSLGGNPAAQASLLLGMYPWKGYTLVEESGCL 434
                           **7777*****************************998887.9********************************************** PP

                  GRAS 359 vlgWkdrpLvsvSaWr 374
                            lgWkd +L+++SaW+
  HL.SW.v1.0.G029557.1 435 KLGWKDLSLLTASAWQ 450
                           ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.19263430IPR005202Transcription factor GRAS
PfamPF035147.8E-11191450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLQSLVTQSP LPNTSNPISD PSTSSSSMKA KRVEREHPTA DETVSEDPST KRPNSGRNFS  60
DDATVSGDKA INDQDEELVV EGESSGLRLL GLLLQCAESV AMDNLNNAGD LLPEIAELSS  120
PFGTSPERVG AYFAHALQAR VISSYLGRYS PLTTKTLNLT QSHRIFNALQ SYNSISPLVK  180
FSHFTANQAI FQALDGVDRV HVIDLDIMQG LQWPGLFHIL ASRSRKIRSM RITGFGSSTE  240
LLESTGRRLA DFANSLGLPF EFHPLEGKIG SITDPSQLDV RPNEATVVHW MHHCLYDITG  300
SDLGTLRLLT LLRPKLITIV EQDLSHGGSF LGRFVEALHY YSALFDALGD VSGADSLERH  360
MVEQQLFGCE IRNIVAVGGP KRTGEVKVDR WGEELKRVGF EPVSLGGNPA AQASLLLGMY  420
PWKGYTLVEE SGCLKLGWKD LSLLTASAWQ PSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1599545125380Protein SCARECROW
5b3h_A1e-1599545124379Protein SCARECROW
5b3h_D1e-1599545124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093140.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2P5DWF40.0A0A2P5DWF4_TREOI; GRAS transcription factor
STRINGXP_010093140.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]