PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029509.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 874aa    MW: 96183.7 Da    PI: 5.0321
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029509.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS267.93.5e-823456662333
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           +++L ++Ae ++sg+  laq++Larl++++sp g+p+qR++ yf+eAL+  l+    +  ++l+ s+    n + ++ a+k+fse+sP+
  HL.SW.v1.0.G029509.1 345 TDQLSKAAELIESGNSILAQEILARLNHHVSPFGKPFQRAVYYFKEALEVSLHM---NATNSLALSPF---NLILKIGAYKTFSEISPL 427
                           689**************************************************9...44445555555...5***************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                           l+f+++t+NqaIleaveg++r+H+iDfdi++G+QW++++q+La R+      +g  sl+iT+++sp+++++ el+ t+e+L++fA+e++
  HL.SW.v1.0.G029509.1 428 LQFANFTCNQAILEAVEGHNRIHVIDFDIGYGGQWASFMQELAIRNgdgggsGGGVSLKITAFVSPSTHDELELSFTHENLKHFASEIN 516
                           **********************************************8876655578********************************* PP

                  GRAS 174 vpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                           +pfe ++l + ++ +   + L ++    Ea+aVn+ ++ ++ +  ++sl+     vL++vk+lsPkvvv  e+  ++++ +F  +++++
  HL.SW.v1.0.G029509.1 517 LPFELEIL-SLEMFNSGGWPLPLRAsdTEAIAVNIPISSFSSY--PLSLPL----VLRFVKQLSPKVVVSLERGWNRTALPFSLQIIHS 598
                           *******7.444444445665444444**********998888..777777....********************************** PP

                  GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                           l+ y+ lf+sl+a    +s++ +k+Er ll++ei++ +    ++     e+   Wr+ + ++GF+p+++s+++
  HL.SW.v1.0.G029509.1 599 LKSYTGLFESLDAV-NINSDALQKIERCLLQQEIEKNILGYRRS----PERTPPWRSSFLRSGFSPLTFSNFT 666
                           ***********776.6799****************999988887....89999****************9986 PP
2GRAS150.22e-46668871160373
                  GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                            t+e+L++fA+e+++pfe +++ + ++ +   + L ++    Ea+aVn+ ++ +  +  ++sl+     vL++vk+lsPkvvv  e+  
  HL.SW.v1.0.G029509.1 668 FTHENLKHFASEINLPFELEIF-SLEMFNSGGWPLPLRAsdTEAIAVNIPISSFFSY--PLSLPL----VLRFVKQLSPKVVVSLERGW 749
                           689******************7.444444456666555444*********9665555..777777....******************** PP

                  GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv.nvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                           ++++ +F  +++++l+ y+ lf+sl+a    +s++ +k+Er ll++ei+ n++ c+ +      e+   Wr+ + ++GF+p+++s++++
  HL.SW.v1.0.G029509.1 750 NRTALPFSLQIIHSLKSYAGLFESLDAV-NINSDALQKIERCLLQPEIEkNILGCRRSP-----EKTPPWRSSFLSSGFSPLTFSNFTE 832
                           *************************776.6799***************72566666665.....99*********************** PP

                  GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                           +qa++l+++ +++g++ve+++ slvl+W++++Lvs+SaW
  HL.SW.v1.0.G029509.1 833 SQAECLVQRSQVRGFHVEKKQTSLVLCWQQKELVSISAW 871
                           *************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.845318852IPR005202Transcription factor GRAS
PfamPF035141.2E-79345666IPR005202Transcription factor GRAS
PfamPF035146.9E-44668871IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MENGSFPEEE EAIAAEMKTA MPLPFEEFQG KGVLDFSSTA SDSLSAPQKW NSVITKENCY  60
VGSEPTSVLD TRRSPSPPTS TSTLSSSLGS GGGVGATGSA DTTTGSGLAL ASEDPSGTAT  120
LVEEKCGIRM EDWDSVLSES PGEEESIMKL FMADVDGQSL GLNKLLQSGS ASQEMEFNAG  180
GFGVVDQGFG FEPIIETGSN CSDFHFNTSS VHNYNANYLL PVSFPSLAFQ QQQQQLVQSV  240
EAKPQAFSVI NQNQAQMAPN VVMPFYSQLQ EHHLVSPPPA KRLNTGATIG SNYMAQKFQF  300
PNSGQEQLQL FHQQRPTTLE VSKQKAMSPA MGEELANHQL QQALTDQLSK AAELIESGNS  360
ILAQEILARL NHHVSPFGKP FQRAVYYFKE ALEVSLHMNA TNSLALSPFN LILKIGAYKT  420
FSEISPLLQF ANFTCNQAIL EAVEGHNRIH VIDFDIGYGG QWASFMQELA IRNGDGGGSG  480
GGVSLKITAF VSPSTHDELE LSFTHENLKH FASEINLPFE LEILSLEMFN SGGWPLPLRA  540
SDTEAIAVNI PISSFSSYPL SLPLVLRFVK QLSPKVVVSL ERGWNRTALP FSLQIIHSLK  600
SYTGLFESLD AVNINSDALQ KIERCLLQQE IEKNILGYRR SPERTPPWRS SFLRSGFSPL  660
TFSNFTDFTH ENLKHFASEI NLPFELEIFS LEMFNSGGWP LPLRASDTEA IAVNIPISSF  720
FSYPLSLPLV LRFVKQLSPK VVVSLERGWN RTALPFSLQI IHSLKSYAGL FESLDAVNIN  780
SDALQKIERC LLQPEIEKNI LGCRRSPEKT PPWRSSFLSS GFSPLTFSNF TESQAECLVQ  840
RSQVRGFHVE KKQTSLVLCW QQKELVSISA WSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2535066424335Protein SCARECROW
5b3h_D2e-2535066424335Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889409.10.0scarecrow-like protein 6
TrEMBLA0A2P5EBN30.0A0A2P5EBN3_TREOI; GRAS transcription factor
STRINGXP_010088896.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-107GRAS family protein