PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029479.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 496aa    MW: 54164.2 Da    PI: 5.1698
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029479.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.2e-32266320155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr+rWtpeLHe Fveav++L G+ekAtPk +l++m+v+gLt++hvkSHLQkYRl
  HL.SW.v1.0.G029479.1 266 KPRMRWTPELHELFVEAVNKLDGAEKATPKGVLKVMNVEGLTIYHVKSHLQKYRL 320
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.588263323IPR017930Myb domain
SuperFamilySSF466895.73E-18264320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-30265321IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-25266321IPR006447Myb domain, plants
PfamPF002492.9E-9268319IPR001005SANT/Myb domain
PfamPF143792.3E-22356402IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSHQSIVSMT QGEPSKEVSS SDCIPLSPVH DFVSSGSEGQ SLLAGECSSS LSSPFIRTES  60
LGSPNLIMRA SSIHPLKYSF GSSSSTPMSP GSHVQHPKNS FSRSSVFCTS LYQSSMSSEA  120
HRHLGNLPFL PPPTCNQSIS AVESTSSPLL FSGDLSNQFE EEQSESEALM KDFLNLSGDA  180
SHSSFHGLNC SSDSLAFTDN LELQYLTDEL DFGISDHGET PRVDEIYETS PKPSIGLMSD  240
ESYRSTAPPV DALLNLPSPG PAALHKPRMR WTPELHELFV EAVNKLDGAE KATPKGVLKV  300
MNVEGLTIYH VKSHLQKYRL AKYMPEQKEE KKDSGLEEKK TALSSNETDG RRKGSVQITE  360
ALRMQMEVQK QLHEQLEVQR ALQLRIEEHA RYLQKILEVQ QKAGSALVSS QALSSLTSPS  420
CEESHQEPSP SAVGSSPQRV ESKTDSASSS PPLKKLKPTE SSDDCDPKQS NKRIRLDEKA  480
EFAGDDEVVV ENSHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-27266323259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021118.10.0myb family transcription factor PHL6
RefseqXP_024021119.10.0myb family transcription factor PHL6
TrEMBLA0A2P5FLT00.0A0A2P5FLT0_TREOI; Octamer-binding transcription factor
STRINGXP_010095978.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-120G2-like family protein