PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029471.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 170aa    MW: 18535.2 Da    PI: 10.7045
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029471.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-192356134
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                          Cs C+tt TplWR gp g+k+LCnaCG++yrkk 
  HL.SW.v1.0.G029471.1 23 CSDCRTTRTPLWRGGPAGPKSLCNACGIRYRKKM 56
                          ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-131757No hitNo description
SMARTSM004011.1E-141769IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4791753IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-152156IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
PfamPF003203.1E-172356IPR000679Zinc finger, GATA-type
CDDcd002021.55E-112355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGTMDFSEKE SLPDQTNENK KCCSDCRTTR TPLWRGGPAG PKSLCNACGI RYRKKMVSVV  60
GLRKGTERKK ERSHGHDHTD SSGGGTAITT SSASKTIKND RNGGQNDKGF SQTTLKVRLI  120
ALGKEMLTHR LSSPSLVKKQ RCRSRRKKLG EEEQAAFLLM ALSCGSVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848007.12e-52PREDICTED: GATA transcription factor 15-like isoform X2
TrEMBLA0A2I4GVT84e-51A0A2I4GVT8_JUGRE; GATA transcription factor 15-like isoform X2
STRINGXP_010094010.13e-49(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-27GATA transcription factor 16