PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029390.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 419aa    MW: 45857.7 Da    PI: 7.6247
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029390.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.7e-42100176278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC+adls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  HL.SW.v1.0.G029390.1 100 CLVDGCNADLSTCRDYHRRHKVCELHSKTPQVTIGGEKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 176
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-3493161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.07797174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.02E-3898179IPR004333Transcription factor, SBP-box
PfamPF031102.5E-31100173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDWNSKAPSW EFTELEQETF SNLGTVNGSN NHFGDYNKTI REDFSVDLKL GQVGNSGNNE  60
LVDTTWKESG LPRHASSTSS PSGSTKRSRG SYNGSQAVSC LVDGCNADLS TCRDYHRRHK  120
VCELHSKTPQ VTIGGEKQRF CQQCSRFHSL EEFDEGKRSC RKRLDGHNRR RRKPQPEPFS  180
RYGSLMSNYS GTQMLPFSSS LVYPSTAVVN PNWGGCVVKA EADSGLHNHH QQQLPFLDKH  240
NMFLGPTSPN NSNANYKGGD GSSNKLFPIL QGHSPGVSAC HPLLLRTFPS LAQCNEVPRS  300
KLFYDRLLTS TTSTTSSTTA QQIHNSDCAL SLLSSPSPQA QTPEMGLGHN IMSHLSSSIS  360
MVGQHPTLQT NNHGLEPFMS SVLITNGSSG NADVHCSGMF SMGSDGHEPH QTLPSHWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281001731184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156173KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010086977.11e-168squamosa promoter-binding-like protein 13A
RefseqXP_024017871.11e-168squamosa promoter-binding-like protein 13A
TrEMBLA0A2P5FD900.0A0A2P5FD90_TREOI; SBP-box transcription factor
STRINGXP_010086977.11e-168(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.15e-66SBP family protein