PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G029269.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HB-other

Protein Properties

Length: 940aa MW: 105110 Da PI: 9.5979

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G029269.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.5	3.1e-05	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+ + g+t +qV+ +F +R + ++ HL.SW.v1.0.G029269.1 69 KRPRDLLNPKAVKYMQSVFSVKDAVSKKECREICALYGVTVTQVREFFASQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.989	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-6	68	133	IPR009057	Homeodomain-like
SMART	SM00389	0.0016	68	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-5	69	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MKVSKENFLE LQIGTSAESL QKSLGSQREL FHSQIDQLQR IVVTQCRLTG ANPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQSVFSVK DAVSKKECRE ICALYGVTVT QVREFFASQR 120 SRVRRLVRLS RENATKSNSC AELNDGVHAS SDLLLPIQPV PLNTIGPTSV EETPPCSTKD 180 DVLPGIDDLD KQFVENIFSL MRKEETYSGQ VKLMEWILQI KNSAVLYWFL CKGGMMILAT 240 WLSQAAEEEQ TSILFVILNV LCHLPLHKAL PVHMSAILQS VNRLRFYRTS EFRERRKVQL 300 VEQPGQRAAG RSPQTTRAGP LNQGRPMSAD DIQKAKLRAQ YMQSKYVKAN SSCENKAAKT 360 EALNKPSTSQ VSNVSTASKV LVRPSMEEHK KPTITPLKVP NTLEASLESK PRTDLKESAW 420 EKCSRVQNLW QTPPEVKLSQ QWRVGTGDNS KEAEFQKNRN RREKETFYQT NQEIPLNPKE 480 PWDREMDYDD SLTPEIPIEQ LPEPNGGSNA EAHVSPKHGV DSAVTQIVAS QRAVGSVPLP 540 PDTSQSGNAS TAEPDLELLA VLLKNPELVF ALTSGQAANL SSEETVKLLD MIKAGNATSN 600 NGINRQVEEK VEVSLPSPTP STNPGTVRHF GLFAGYHNHS QFFTGTAKLI LLYFIMSGWR 660 PEGVRNPFSR VPLPKRVAES PPAVATAKSV LPSHMLAPHN PPVMSSYSLS QVTSMVHEKY 720 SPLGSSLHQP PLTSSPIVHT NLPPATGPMY NLHPQDVSSL RLESATNIKP QASMSNNMYN 780 VEERRHHSFP TPLPVAPSRL MLPHMHQQQY QPQQQQQHYA EPSPSVPMYS KQIGKSSNAP 840 DSWRPQQNLP SNYNPIVNQN NSNYHRGLYV EEDEFESWSP DNSPSRNSEY GGLGRSFPEP 900 RMDSGRGYRP TDQSRVRSSP GYRDSNRHGN RRWRDQRRR*

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MKVSKENFLE LQIGTSAESL QKSLGSQREL FHSQIDQLQR IVVTQCRLTG ANPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQSVFSVK DAVSKKECRE ICALYGVTVT QVREFFASQR  120
SRVRRLVRLS RENATKSNSC AELNDGVHAS SDLLLPIQPV PLNTIGPTSV EETPPCSTKD  180
DVLPGIDDLD KQFVENIFSL MRKEETYSGQ VKLMEWILQI KNSAVLYWFL CKGGMMILAT  240
WLSQAAEEEQ TSILFVILNV LCHLPLHKAL PVHMSAILQS VNRLRFYRTS EFRERRKVQL  300
VEQPGQRAAG RSPQTTRAGP LNQGRPMSAD DIQKAKLRAQ YMQSKYVKAN SSCENKAAKT  360
EALNKPSTSQ VSNVSTASKV LVRPSMEEHK KPTITPLKVP NTLEASLESK PRTDLKESAW  420
EKCSRVQNLW QTPPEVKLSQ QWRVGTGDNS KEAEFQKNRN RREKETFYQT NQEIPLNPKE  480
PWDREMDYDD SLTPEIPIEQ LPEPNGGSNA EAHVSPKHGV DSAVTQIVAS QRAVGSVPLP  540
PDTSQSGNAS TAEPDLELLA VLLKNPELVF ALTSGQAANL SSEETVKLLD MIKAGNATSN  600
NGINRQVEEK VEVSLPSPTP STNPGTVRHF GLFAGYHNHS QFFTGTAKLI LLYFIMSGWR  660
PEGVRNPFSR VPLPKRVAES PPAVATAKSV LPSHMLAPHN PPVMSSYSLS QVTSMVHEKY  720
SPLGSSLHQP PLTSSPIVHT NLPPATGPMY NLHPQDVSSL RLESATNIKP QASMSNNMYN  780
VEERRHHSFP TPLPVAPSRL MLPHMHQQQY QPQQQQQHYA EPSPSVPMYS KQIGKSSNAP  840
DSWRPQQNLP SNYNPIVNQN NSNYHRGLYV EEDEFESWSP DNSPSRNSEY GGLGRSFPEP  900
RMDSGRGYRP TDQSRVRSSP GYRDSNRHGN RRWRDQRRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017708.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-120	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2P5FFR5	0.0	A0A2P5FFR5_TREOI; Octamer-binding transcription factor
STRING	EOX94988	1e-163	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-115	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]