PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029231.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 582aa    MW: 62627.2 Da    PI: 7.2242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029231.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-09389436455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  HL.SW.v1.0.G029231.1 389 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 436
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-17383453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-10383440No hitNo description
Gene3DG3DSA:4.10.280.109.3E-17385454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6389436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MENGFFLNAA ITPSLHFESS NTVPNWQSAP SAAPPEIQAM ELNCSSERSP EYGFYNPTWE  60
KSTVDQGVHF DSALSSMVSS PVASNISNDS FVIRELIGKL GNIGNSGEIS PHSRTFISAA  120
SAAPAGPYIA GNRSSNTSCY STPMNSPQKM KLEKLPSIGK SMAVNSTVAE LSADPGFAER  180
AARFSCFGSR SFNGRTTQLG LNNNSEFIPH GHGSSTSRSN NSPLMGHGKL SRVSSSPSLK  240
ALESQMGVHE KQNSPLQDRT AGLAANSQDE STVSEQNPNG ETGLRVVSNE TNSRKRKAAA  300
KGKSKEPAST SSPSTKGVEI NDNSNAKRSK QTEENKGNDK GSSKTEEETN GNSNGLAGDD  360
KQAKSSPKPP EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG  420
KALMLDEIIN YVQSLQRQVE FLSMKLSSVN TRLDTNMETL MSKDVFQPNS SAPHPIFPLD  480
SSAQSIYGHP NQPNSELHSG ISSGAMAHGS MDPLDTTALF QSLGLQLPQL NGFRELISQY  540
PQFGEDDLHT IVQMGFGQNQ TRDGSLQPQS LNGKGINDNF F*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892293.10.0transcription factor bHLH62
TrEMBLA0A2P5B2Q90.0A0A2P5B2Q9_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008244684.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-110bHLH family protein