PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028959.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 338aa    MW: 38399.9 Da    PI: 9.1207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028959.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.8e-331972255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  HL.SW.v1.0.G028959.1 19 PRLRWTPELHHCFVHAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-311574IPR009057Homeodomain-like
PROSITE profilePS5129410.7311575IPR017930Myb domain
SuperFamilySSF466891.63E-151772IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-231972IPR006447Myb domain, plants
PfamPF002496.7E-92071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HKKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRGDLGRQ DRTSSNHLQR SRQHFNEEYE HNHRIMIDQY DDVDDEDDQV  120
NSVGFNSSSK RIRESDSHHL IYTSLPSKRA RIETRSSSLQ CSERILSSSN ETVRSPYYFD  180
DYNLVALGLG DQPQQQQQQL LKGIKEPHSS PFSLPQRLYN LNPFKYAVQE SDFFKINKLG  240
ERSYEPKRPC KQEKTTMTTA DHDHDVVASG CGLSLSLPLH HHHHRSSNKS NASSTSEISE  300
TITSSYTTTM SAYKVCSSSS AKHSRLNLDL SIALCGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-182074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894296.11e-122putative Myb family transcription factor At1g14600 isoform X1
RefseqXP_024933893.11e-122putative Myb family transcription factor At1g14600 isoform X2
RefseqXP_024933894.11e-122putative Myb family transcription factor At1g14600 isoform X3
TrEMBLA0A2P5AQT71e-121A0A2P5AQT7_TREOI; Homeodomain-like
STRINGXP_010093351.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.14e-33G2-like family protein