PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028816.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 670aa    MW: 74812.1 Da    PI: 6.5502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028816.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22121221198
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F
  HL.SW.v1.0.G028816.1 121 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIF 207
                           99****************************964333..4459*********************************************** PP

                           EE-SSSEE..EEEEE- CS
                    B3  83 kldgrsefelvvkvfr 98 
                              + +++el+v+v+r
  HL.SW.v1.0.G028816.1 208 L--RGENGELRVGVRR 221
                           *..449999*****97 PP
2Auxin_resp109.82.7e-36247329183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           a+ha+st++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ W +S+WrsLk
  HL.SW.v1.0.G028816.1 247 ASHAISTGTLFSVFYKPRTSRSEFLVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNTSSGWAHSEWRSLK 329
                           789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-43113250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-40117236IPR015300DNA-binding pseudobarrel domain
CDDcd100179.51E-21119221No hitNo description
SMARTSM010191.0E-21121223IPR003340B3 DNA binding domain
PfamPF023622.6E-20121221IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279121223IPR003340B3 DNA binding domain
PfamPF065072.3E-34247329IPR010525Auxin response factor
PfamPF023092.0E-6542581IPR033389AUX/IAA domain
PROSITE profilePS5174528.175545637IPR000270PB1 domain
SuperFamilySSF542774.86E-12548622No hitNo description
PfamPF023094.6E-6592635IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MNPSSNGSPP ASSDELFKEL WHACAGPLVT LPREGERVYY FPQGHMEQLE ASMHQGLEQQ  60
MPSFNLPSKI LCKVVYVQLR AEVETDEVYA QITLLPEQDQ TELTSPDPPP ADPPRCTVHS  120
FCKTLTASDT STHGGFSVLR RHADDCLPPL DMSQQPPWQE LVATDLHGNE WHFRHIFRGQ  180
PRRHLLTTGW SVFVSSKKLV AGDAFIFLRG ENGELRVGVR RLMRQPSNMP SSVISSHSMH  240
LGVLATASHA ISTGTLFSVF YKPRTSRSEF LVSVNKYLEA RNHKLSVGMR FKMRFEGEEV  300
PERRFSGTIV GVGDNTSSGW AHSEWRSLKV QWDEPSSIMR PERVSSWELE PLVATPLPTS  360
QPTQRNKRSR PSALPPPASE LSVLGTWKSP GDSPSAFSYC DQQRGQELHP SPKFSSASKS  420
NSHGFSGNSN LATMSSNTMY WSNRVDAVTE SFSIYKDSGE RKQNTGNSCR LFGIQLVDNS  480
NLKDTSPVVA ATGSFGDAPQ IPSLDAESEH SEPSNVNRAD HPSVSYDAEK SSLRSPQELQ  540
SRQIRSCTKV HMQGIAVGRA VDLTRFDRYE DLLRKLEDMF DIQGELCGST KKWQVVYTDD  600
EDDMMMVGDD PWHEFCSMVR KIFIYTTEEV KMLSPKIKLP VRKDVKPGKQ EFELAVNPDE  660
QSSIVGPGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053527355Auxin response factor 1
4ldw_A0.053527355Auxin response factor 1
4ldw_B0.053527355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023552.10.0auxin response factor 1
RefseqXP_024023553.10.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2P5D5I90.0A0A2P5D5I9_TREOI; Auxin response factor
STRINGXP_008218645.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]