PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028754.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 255aa MW: 28761.7 Da PI: 9.7199 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37.9 | 4.7e-12 | 20 | 90 | 1 | 67 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikeg 67 +W++ + +Liea ++ +l+rg+l++++W+ev++++ r+ g++ ++ +qCk++ + l+k+yk +k HL.SW.v1.0.G028754.1 20 CWSEGATETLIEAWGDRYLQLNRGNLRQKDWKEVAEAVngRDNGLKpyKTDVQCKNRVDTLKKKYKLEKSK 90 7*************************************99888885337*****************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-25 | 18 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDRPGKTTAT RPHAGGREDC WSEGATETLI EAWGDRYLQL NRGNLRQKDW KEVAEAVNGR 60 DNGLKPYKTD VQCKNRVDTL KKKYKLEKSK PLPSAWAFYP RLDFLIGSTN KKPTTVTLTI 120 KSAKPTTSRP GPKPPAYLAR SPDSSPENDD NVEEDDGDGG GFNGTRVVMR KHRMEAVDLS 180 DGAACRELAR AILKFGEIYE RIESSKQQKM MELEKERMEF AKELESQRLN MFMDAQLELE 240 KMKRAKYAPG SGKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027329.1 | 1e-104 | trihelix transcription factor ASIL2 isoform X4 | ||||
Swissprot | Q9LJG8 | 2e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2P5E0G8 | 1e-117 | A0A2P5E0G8_PARAD; Sequence-specific DNA binding transcription factor | ||||
STRING | XP_010105432.1 | 1e-103 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-68 | sequence-specific DNA binding transcription factors |