PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 21901.6 Da PI: 8.2822 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.1 | 9.5e-41 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++++ HL.SW.v1.0.G028753.1 12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMAE 100 6**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++la ++++ HL.SW.v1.0.G028753.1 101 LQHDLAFARAR 111 *****998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.378 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-40 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKGGHEPRAS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMAE LQHDLAFARA RLARFAAHSS 120 SSSSSSSSSY SSSSSSFSYG AILDGRLITE AAAFSGLPSA NCAGLSSGLI TTDHQALNSQ 180 SSFEFCQNNS VYHDFSFVPY IL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-48 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-48 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027330.1 | 2e-77 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A2P5EM60 | 1e-87 | A0A2P5EM60_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | VIT_13s0067g01450.t01 | 5e-76 | (Vitis vinifera) | ||||
STRING | cassava4.1_029097m | 5e-76 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 4e-60 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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