PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19866.1 Da PI: 7.5965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.6 | 2.4e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ + HL.SW.v1.0.G028743.1 11 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIR 99 7**************************************************************************************** PP DUF260 90 lkaelallke 99 l++el+++++ HL.SW.v1.0.G028743.1 100 LQKELDATNA 109 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.673 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSSSYSNS PCAACKFLRR KCMPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEVL 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LMRYARTIDH 120 HGHGHGHGLS SHSSANSHPY AAATQNSSSA PSSFYFTNSP WSCDDPHSCS GDHHRAGGGN 180 NM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-65 | 2 | 115 | 2 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-65 | 2 | 115 | 2 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013448135.1 | 7e-82 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 2e-69 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2P5AYI6 | 2e-88 | A0A2P5AYI6_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010108819.1 | 5e-80 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-68 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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