PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028698.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | Trihelix | ||||||||
Protein Properties | Length: 174aa MW: 18716.1 Da PI: 6.7029 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37 | 9e-12 | 132 | 169 | 1 | 38 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 rW++qe+l+L+e+r+ ++++++++++k+plW+evs++ HL.SW.v1.0.G028698.1 132 RWPRQETLTLLEIRSCLDSKFKEANQKGPLWDEVSRYA 169 8**********************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MEMEDQYGMA DLRQLMNGTR SHFPAIPQST ELFPGHRPGI SPAVQPFEMM MMGGHPVVGP 60 AADIMPRGFH HHHHHHHQHH QFMRSDSAAT SGGASITTIT ATSAPSLSGG GGGLELAESG 120 GCLGMMDGGT GRWPRQETLT LLEIRSCLDS KFKEANQKGP LWDEVSRYAL SFG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024923498.1 | 6e-43 | trihelix transcription factor PTL | ||||
TrEMBL | A0A2P5C4R9 | 7e-64 | A0A2P5C4R9_TREOI; GAMYB transcription factor | ||||
STRING | XP_008241284.1 | 7e-42 | (Prunus mume) | ||||
STRING | EMJ05326 | 5e-42 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21094 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 9e-17 | Trihelix family protein |