PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028697.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 465aa    MW: 52903.2 Da    PI: 6.7085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028697.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.5e-143493987
              trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                          +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  HL.SW.v1.0.G028697.1  3 EEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49
                          69*****************************98..55667*******85 PP
2trihelix591.2e-18288363276
              trihelix   2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           W+++ev  Li++r++m++r+++g   ++ lWe++++k++  g+ers  +Ck+kwe++n + k  ++ e++++ ++ 
  HL.SW.v1.0.G028697.1 288 WPESEVSRLIQFRTSMDSRFEQGGfPEEVLWEDIAAKLACLGYERSGLMCKDKWESINHYVKISNNKESSKKRKEN 363
                           *********************97637899*********************************99888877642222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-9350No hitNo description
PROSITE profilePS500906.957280345IPR017877Myb-like domain
CDDcd122034.66E-20286352No hitNo description
PfamPF138377.2E-13287360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGDTSNHQVS  60
SSSLPEAHFV GNNLRFPTLN TPTSQANNNQ LLDQGPYQSH LNKHTCDSLS LSNSSEFESS  120
SSDDNNDFSN AGLVMADNDS SEKMMVMMRR NKKRSGSGGS RWKVKIKEFI DSQMRKLMEK  180
QDTWLEKLMR TLEQKEKERS LREEEWRKQE SARIDREHKF WAKERAWIEA RDAALMDALH  240
KLTGKEVHYK VSSPEEGLML AAAAAAAGEN NVPVDEGESE TQNRDETWPE SEVSRLIQFR  300
TSMDSRFEQG GFPEEVLWED IAAKLACLGY ERSGLMCKDK WESINHYVKI SNNKESSKKR  360
KENSRSSSGN YFQNNTTTTN ENSATTANNN NNNNSLYNHG EVYSCDQMSD HQGAGQTTAR  420
LPVNDGSSPS NANVHDSCFP FLMGEGDNLW ENYGLKLSKG GQNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRNKKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295967e-51KP229596.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB40) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024923498.11e-176trihelix transcription factor PTL
TrEMBLA0A2P5AIL30.0A0A2P5AIL3_PARAD; GAMYB transcription factor
STRINGGLYMA03G34960.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-59Trihelix family protein