PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028627.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 439aa    MW: 47447.3 Da    PI: 9.6651
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028627.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049176197323
                           ETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  ++L+ H+ + H
  HL.SW.v1.0.G028627.1 176 CSQCGEVFPKIESLELHQAVrH 197
                           ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933174202IPR007087Zinc finger, C2H2
PROSITE patternPS000280176197IPR007087Zinc finger, C2H2
SuperFamilySSF563991.44E-25199433No hitNo description
Gene3DG3DSA:3.90.228.101.2E-16201433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MALLAFAPEP TDSKKPTHQS KRKKRPKQQQ QQAKQQKPTS SWDQIKNLLT CKQIEGSRVH  60
DPSKNGTVGY SKLGSSCGSI CSFRDVVHGN TRVVHRADNS PENSTVGQET GLLSRKAVNG  120
SSTRSTSGSA RSNGGTGYTS SSRGMQFRKL SGCYECHMIV DPSRYPIIPR STISACSQCG  180
EVFPKIESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDNPIFQI ERILKVQNTQ  240
RTIQRFEDCR DAVKTRALNS TRKNPRCAAD GNELLRFHCS TLTCSLGARG ASSLCGSVPG  300
CGVCTIIRHG FQGNKSGSSS NNNNNNTAAT TTTSIATQTQ GSESGKGVWT TASSGRAHDS  360
LRCTDGRRAM LVCRVIAGRV KRYADDAPAE EDSVSLGSSY DSVAGYAGVY SNLEELIVFN  420
PRAILPCFVV IYKALDSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026KRKKRPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104443.10.0uncharacterized protein LOC21399114
TrEMBLA0A2P5F7Z40.0A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_010104443.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-179C2H2-like zinc finger protein